Variant report

Variant	rs7133485
Chromosome Location	chr12:26402416-26402417
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11048444	0.82[EUR][1000 genomes]
rs11502725	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12312234	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73297019	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817432	chr12:26355515-26873664	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26394000-26404600	Weak transcription	Pancreas	Pancrea
2	chr12:26401000-26404800	Weak transcription	Stomach Mucosa	stomach
3	chr12:26401200-26403800	Weak transcription	Osteobl	bone
4	chr12:26402200-26402600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr12:26402200-26402800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr12:26402200-26403000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr12:26402400-26402800	ZNF genes & repeats	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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