Variant report

Variant	rs7133799
Chromosome Location	chr12:62040367-62040368
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10784251	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10877720	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10877721	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1395491	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1506850	0.92[EUR][1000 genomes]
rs1876279	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2089375	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4304856	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6581417	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7135068	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7136249	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7309363	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7399207	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7399269	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7964678	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7973303	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7973844	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042044	chr12:61256015-62196885	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62039800-62041000	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr12:62039800-62041200	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr12:62039800-62041200	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr12:62039800-62041200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr12:62040000-62040400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr12:62040000-62040600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr12:62040000-62041000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr12:62040000-62041200	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr12:62040000-62041200	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr12:62040000-62041200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr12:62040200-62041000	Enhancers	H1 Cell Line	embryonic stem cell
12	chr12:62040200-62041400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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