Variant report

Variant	rs7133937
Chromosome Location	chr12:44799124-44799125
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11182553	1.00[AMR][1000 genomes]
rs11182555	1.00[AMR][1000 genomes]
rs12227198	1.00[AMR][1000 genomes]
rs7138748	1.00[AMR][1000 genomes]
rs7297038	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7312860	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049818	chr12:44486312-45133783	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1038498	chr12:44679455-44816572	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44797800-44800200	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr12:44798200-44799200	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr12:44798200-44800000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr12:44798600-44799400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr12:44798600-44800400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr12:44798800-44799400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr12:44798800-44799600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
8	chr12:44799000-44799200	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr12:44799000-44799400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr12:44799000-44799400	Enhancers	Fetal Intestine Large	intestine
11	chr12:44799000-44799600	Enhancers	H9 Cell Line	embryonic stem cell
12	chr12:44799000-44799800	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr12:44799000-44799800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links