Variant report

Variant	rs71339756
Chromosome Location	chr6:140694981-140694982
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs1021722	0.80[EUR][1000 genomes]
rs10404462	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10406824	0.85[AMR][1000 genomes]
rs10412139	0.80[EUR][1000 genomes]
rs10414373	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10420166	0.81[AMR][1000 genomes]
rs10423403	0.80[EUR][1000 genomes]
rs11085455	0.80[EUR][1000 genomes]
rs1500400	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1500401	0.80[EUR][1000 genomes]
rs1520071	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1520072	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1520073	0.85[AMR][1000 genomes]
rs1607664	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1879235	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1963056	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1984771	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2056319	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2062564	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2090707	0.83[AMR][1000 genomes]
rs2133816	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2133820	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2133821	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2173723	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2173724	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2246914	0.80[EUR][1000 genomes]
rs2359162	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2562399	0.85[AMR][1000 genomes]
rs2562441	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2562448	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2562472	0.83[AMR][1000 genomes]
rs2562473	0.83[AMR][1000 genomes]
rs2650757	0.85[AMR][1000 genomes]
rs2650759	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2650760	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2650791	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2650794	0.80[EUR][1000 genomes]
rs2650799	0.80[EUR][1000 genomes]
rs2650806	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2650807	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2650827	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2650829	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2650830	0.81[AMR][1000 genomes]
rs2650834	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2650835	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2681365	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2681366	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2681368	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2681371	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2681372	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2681375	0.85[AMR][1000 genomes]
rs2681380	0.83[AMR][1000 genomes]
rs2681382	0.85[AMR][1000 genomes]
rs2681383	0.85[AMR][1000 genomes]
rs2681384	0.83[AMR][1000 genomes]
rs2681390	0.83[AMR][1000 genomes]
rs34006898	0.80[EUR][1000 genomes]
rs34978316	0.84[AMR][1000 genomes]
rs35088652	0.80[EUR][1000 genomes]
rs35366148	0.83[AMR][1000 genomes]
rs62108331	0.80[EUR][1000 genomes]
rs6511261	0.80[EUR][1000 genomes]
rs8100193	0.80[EUR][1000 genomes]
rs8100318	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs8102699	0.81[AMR][1000 genomes]
rs8102854	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs8106433	0.80[EUR][1000 genomes]
rs8111788	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1015293	chr6:140544956-140798437	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv817390	chr6:140558103-141166039	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv432965	chr6:140692307-140866307	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140693000-140696200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:140693400-140700200	Weak transcription	NHLF	lung
3	chr6:140693600-140697000	Weak transcription	Fetal Heart	heart
4	chr6:140693600-140701200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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