Variant report

Variant	rs713463
Chromosome Location	chr2:180438342-180438343
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10169569	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1399692	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2203459	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3112926	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3112931	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7579911	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs868271	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs868272	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs868273	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs868274	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs999000	0.86[AFR][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180433000-180440800	Weak transcription	Gastric	stomach
2	chr2:180433000-180445600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:180434000-180438600	Enhancers	HepG2	liver
4	chr2:180435000-180438600	Weak transcription	Osteobl	bone
5	chr2:180435000-180438800	Weak transcription	Fetal Lung	lung
6	chr2:180435200-180461000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr2:180435400-180438600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr2:180435400-180446400	Weak transcription	Fetal Kidney	kidney
9	chr2:180435800-180438400	Enhancers	Liver	Liver
10	chr2:180436200-180439000	Weak transcription	Fetal Intestine Large	intestine
11	chr2:180437600-180445200	Weak transcription	Skeletal Muscle Male	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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