Variant report

Variant	rs7135062
Chromosome Location	chr12:12121620-12121621
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10743970	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10845434	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10845435	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11054560	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4763263	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7134648	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7303655	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7486861	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949003	chr12:11938229-12618690	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv898804	chr12:12058411-12202173	Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv898805	chr12:12119414-12156322	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:12112000-12123000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr12:12114600-12122600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr12:12115000-12122800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr12:12117400-12121800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr12:12120000-12121800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr12:12120800-12125800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr12:12121000-12121800	Enhancers	Primary hematopoietic stem cells	blood
8	chr12:12121000-12124000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr12:12121200-12122800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr12:12121400-12122200	Enhancers	GM12878-XiMat	blood
11	chr12:12121400-12123800	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr12:12121600-12121800	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr12:12121600-12121800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr12:12121600-12122200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr12:12121600-12123600	Enhancers	H1 Cell Line	embryonic stem cell
16	chr12:12121600-12123600	Enhancers	HUES64 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links