Variant report

Variant	rs713529
Chromosome Location	chr3:142902065-142902066
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:142901683..142905677-chr3:142909688..142913196,5	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs6767601	1.00[ASN][1000 genomes]
rs6800212	1.00[ASN][1000 genomes]
rs6803913	1.00[ASN][1000 genomes]
rs7624271	1.00[ASN][1000 genomes]
rs7625166	1.00[ASN][1000 genomes]
rs7648038	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757893	chr3:142720230-142962932	Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv2759183	chr3:142720230-142964373	Strong transcription Weak transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv508250	chr3:142842454-142943722	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv34280	chr3:142887460-142962075	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv818171	chr3:142894411-142960273	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1009573	chr3:142896048-142959777	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142893200-142909200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr3:142898800-142902200	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr3:142899000-142902200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr3:142899000-142902400	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr3:142900200-142903400	Enhancers	Primary hematopoietic stem cells	blood
6	chr3:142900400-142902200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr3:142900800-142903000	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr3:142901200-142902600	Enhancers	Dnd41	blood
9	chr3:142901600-142902400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr3:142901600-142902400	Enhancers	Primary T cells from cord blood	blood
11	chr3:142901600-142902400	Enhancers	GM12878-XiMat	blood
12	chr3:142901600-142903200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr3:142901600-142903200	Enhancers	Fetal Thymus	thymus
14	chr3:142901800-142902600	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr3:142901800-142902800	Weak transcription	Primary B cells from cord blood	blood
16	chr3:142901800-142902800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr3:142902000-142902400	Active TSS	Hela-S3	cervix
18	chr3:142902000-142902600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
19	chr3:142902000-142903000	Weak transcription	Primary B cells from peripheral blood	blood
20	chr3:142902000-142903000	Flanking Active TSS	K562	blood

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