Variant report

Variant	rs7135459
Chromosome Location	chr12:124300526-124300527
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11057315	1.00[TSI][hapmap]
rs11830487	1.00[EUR][1000 genomes]
rs11832319	1.00[EUR][1000 genomes]
rs11836898	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7134863	1.00[TSI][hapmap]
rs7137130	1.00[TSI][hapmap]
rs7304334	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498024	chr12:123994372-124459856	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:124300000-124301400	Enhancers	Brain Hippocampus Middle	brain
2	chr12:124300000-124301400	Enhancers	Brain Substantia Nigra	brain
3	chr12:124300200-124301400	Enhancers	Brain Anterior Caudate	brain
4	chr12:124300200-124301400	Enhancers	Brain Cingulate Gyrus	brain
5	chr12:124300400-124301200	Enhancers	Brain Inferior Temporal Lobe	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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