Variant report

Variant	rs71354939
Chromosome Location	chr19:37856517-37856518
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:37855409..37858293-chr19:37876540..37879521,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12974525	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs12977460	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv2757695	chr19:37794850-38051606	Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	esv2758759	chr19:37794850-38051606	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1057688	chr19:37828019-37988253	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37826600-37861600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr19:37842800-37856600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr19:37843800-37857600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
4	chr19:37844000-37857000	ZNF genes & repeats	Liver	Liver
5	chr19:37849200-37857000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr19:37850000-37856800	ZNF genes & repeats	A549	lung
7	chr19:37851000-37856600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
8	chr19:37852200-37857000	ZNF genes & repeats	Dnd41	blood
9	chr19:37853000-37856600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
10	chr19:37853000-37856600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
11	chr19:37853000-37857000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
12	chr19:37853200-37856800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
13	chr19:37853200-37857000	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr19:37853200-37857200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr19:37853400-37856600	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr19:37853600-37856600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
17	chr19:37854200-37857000	ZNF genes & repeats	Adipose Nuclei	Adipose
18	chr19:37854200-37861200	Weak transcription	Psoas Muscle	Psoas
19	chr19:37854200-37861400	Weak transcription	Small Intestine	intestine
20	chr19:37855000-37861400	Weak transcription	Fetal Heart	heart
21	chr19:37855000-37861600	Weak transcription	Aorta	Aorta
22	chr19:37855200-37860800	Weak transcription	Brain Cingulate Gyrus	brain
23	chr19:37855200-37861000	Weak transcription	Right Ventricle	heart
24	chr19:37855200-37861200	Weak transcription	Left Ventricle	heart
25	chr19:37855200-37861400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr19:37855200-37861400	Weak transcription	Fetal Brain Male	brain
27	chr19:37855200-37861400	Weak transcription	NH-A	brain
28	chr19:37855400-37860400	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr19:37855400-37860800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr19:37855400-37860800	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr19:37855400-37861000	Weak transcription	Fetal Kidney	kidney
32	chr19:37855400-37861400	Weak transcription	Hela-S3	cervix
33	chr19:37855600-37860600	Weak transcription	Stomach Smooth Muscle	stomach
34	chr19:37855600-37860800	Weak transcription	Brain Angular Gyrus	brain
35	chr19:37855600-37861200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr19:37855600-37861200	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr19:37855600-37861400	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr19:37855600-37861400	Weak transcription	Ovary	ovary
39	chr19:37855600-37861400	Weak transcription	HSMMtube	muscle
40	chr19:37855600-37861400	Weak transcription	Osteobl	bone
41	chr19:37855800-37860800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr19:37855800-37861200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr19:37855800-37861400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr19:37855800-37861400	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr19:37856000-37856800	ZNF genes & repeats	Fetal Lung	lung
46	chr19:37856400-37856600	Weak transcription	HUVEC	blood vessel
47	chr19:37856400-37861400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr19:37856400-37861400	Weak transcription	Brain Hippocampus Middle	brain

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