Variant report

Variant	rs71356003
Chromosome Location	chr19:36968859-36968860
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:36965657..36967855-chr19:36968852..36972035,4	K562	blood:
2	chr19:36966764..36969281-chr19:36976956..36980463,3	K562	blood:
3	chr19:36966894..36968985-chr19:36971010..36973941,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000186017	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10402838	0.98[ASN][1000 genomes]
rs10407389	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10409422	0.87[AMR][1000 genomes]
rs10409996	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10411104	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10411232	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10416494	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10417866	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10421862	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28520081	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2967536	0.93[ASN][1000 genomes]
rs71356007	0.83[ASN][1000 genomes]
rs9676533	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9676958	0.81[ASN][1000 genomes]
rs9967600	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833816	chr19:36824257-37034287	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv1064851	chr19:36910259-37689721	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
3	nsv911648	chr19:36914171-37047472	Weak transcription Active TSS Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
4	nsv1065698	chr19:36916796-37690124	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
5	nsv543999	chr19:36916796-37690124	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
6	nsv1067364	chr19:36921204-36985874	ZNF genes & repeats Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv529817	chr19:36930549-37654062	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36936400-36978400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr19:36941000-36979000	Weak transcription	Hela-S3	cervix
3	chr19:36944800-36969600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr19:36945800-36979000	Weak transcription	Fetal Heart	heart
5	chr19:36947600-36977400	ZNF genes & repeats	Liver	Liver
6	chr19:36954000-36972200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr19:36957200-36979600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr19:36957400-36979400	Weak transcription	NH-A	brain
9	chr19:36958800-36971200	ZNF genes & repeats	A549	lung
10	chr19:36960400-36979600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr19:36963400-36979200	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr19:36963800-36969400	Weak transcription	Spleen	Spleen
13	chr19:36964000-36970600	Weak transcription	NHDF-Ad	bronchial
14	chr19:36964000-36975000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr19:36964000-36979800	Weak transcription	Esophagus	oesophagus
16	chr19:36964200-36971200	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr19:36964200-36978200	Weak transcription	Brain Angular Gyrus	brain
18	chr19:36964200-36979000	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr19:36964200-36979000	Weak transcription	Osteobl	bone
20	chr19:36964200-36979200	Weak transcription	Stomach Mucosa	stomach
21	chr19:36964200-36979400	Weak transcription	Brain Anterior Caudate	brain
22	chr19:36964200-36979600	Weak transcription	Placenta	Placenta
23	chr19:36964200-36979600	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr19:36964400-36970600	Weak transcription	Thymus	Thymus
25	chr19:36964400-36973400	Weak transcription	HepG2	liver
26	chr19:36964400-36974000	Weak transcription	Brain Substantia Nigra	brain
27	chr19:36964400-36978800	Weak transcription	K562	blood
28	chr19:36964400-36979000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr19:36964600-36969000	Weak transcription	Fetal Lung	lung
30	chr19:36964600-36973400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr19:36964600-36979200	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr19:36964600-36979400	Weak transcription	Brain Cingulate Gyrus	brain
33	chr19:36964800-36974400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr19:36964800-36979600	Weak transcription	Fetal Kidney	kidney
35	chr19:36965200-36973200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr19:36965400-36971400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr19:36965400-36974000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr19:36965400-36979200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr19:36965600-36969200	Weak transcription	Rectal Smooth Muscle	rectum
40	chr19:36965600-36969400	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr19:36965800-36978000	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr19:36966000-36973200	Weak transcription	Fetal Muscle Leg	muscle
43	chr19:36966400-36969200	Weak transcription	Aorta	Aorta
44	chr19:36966400-36969200	Weak transcription	Duodenum Mucosa	Duodenum
45	chr19:36966400-36969400	Weak transcription	Fetal Stomach	stomach
46	chr19:36966400-36969800	Weak transcription	Pancreas	Pancrea
47	chr19:36966400-36978400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr19:36966400-36979000	Weak transcription	Colon Smooth Muscle	Colon
49	chr19:36966400-36979200	Weak transcription	Adipose Nuclei	Adipose
50	chr19:36966400-36979600	Weak transcription	HSMMtube	muscle

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