Variant report

Variant	rs71361340
Chromosome Location	chr18:29269233-29269234
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12967642	0.89[EUR][1000 genomes]
rs17803358	0.87[ASN][1000 genomes]
rs1791168	0.90[ASN][1000 genomes]
rs34844920	1.00[EUR][1000 genomes]
rs35217404	0.89[EUR][1000 genomes]
rs35271356	1.00[EUR][1000 genomes]
rs3810003	0.87[ASN][1000 genomes]
rs6506937	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71361333	0.89[EUR][1000 genomes]
rs71361335	0.99[EUR][1000 genomes]
rs71361336	0.99[EUR][1000 genomes]
rs71361337	1.00[EUR][1000 genomes]
rs71361338	1.00[EUR][1000 genomes]
rs71361339	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71361341	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909519	chr18:29172865-29330214	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1059078	chr18:29225522-29454980	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv543675	chr18:29225522-29454980	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29266400-29269400	Enhancers	Dnd41	blood
2	chr18:29267200-29282600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr18:29267600-29269400	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr18:29267600-29270200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr18:29268000-29269600	Enhancers	Primary hematopoietic stem cells	blood
6	chr18:29268000-29274000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr18:29268400-29269400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr18:29268600-29269400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr18:29268600-29269400	Enhancers	Fetal Thymus	thymus
10	chr18:29268600-29269400	Enhancers	Thymus	Thymus
11	chr18:29268800-29269600	Weak transcription	Adipose Nuclei	Adipose
12	chr18:29269200-29269400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr18:29269200-29275400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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