Variant report

Variant	rs71361359
Chromosome Location	chr18:29519162-29519163
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:29518719..29521005-chr18:29521192..29525426,5	MCF-7	breast:
2	chr18:29517111..29520943-chr18:29521139..29523956,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000263823	Chromatin interaction
ENSG00000153339	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1915	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34221651	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35556866	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431975	chr18:29311034-29527902	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1067252	chr18:29475073-29583744	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29432600-29521400	Weak transcription	Stomach Mucosa	stomach
2	chr18:29462000-29520000	Weak transcription	Fetal Heart	heart
3	chr18:29478600-29522000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr18:29480600-29519400	Weak transcription	Spleen	Spleen
5	chr18:29482400-29522000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr18:29482600-29521600	Weak transcription	Rectal Smooth Muscle	rectum
7	chr18:29482800-29521600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr18:29484400-29520800	Weak transcription	Fetal Brain Female	brain
9	chr18:29484800-29521000	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr18:29488000-29519600	Weak transcription	Stomach Smooth Muscle	stomach
11	chr18:29492600-29519600	Weak transcription	Ovary	ovary
12	chr18:29493000-29521600	Weak transcription	Aorta	Aorta
13	chr18:29493400-29521600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr18:29496600-29521400	Weak transcription	NHEK	skin
15	chr18:29500600-29521400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr18:29502800-29519400	Weak transcription	GM12878-XiMat	blood
17	chr18:29505200-29521800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr18:29506800-29521600	Weak transcription	A549	lung
19	chr18:29508800-29520400	Weak transcription	Brain Germinal Matrix	brain
20	chr18:29509000-29519400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr18:29509200-29520800	Weak transcription	Fetal Lung	lung
22	chr18:29509400-29521000	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr18:29509600-29519400	Weak transcription	Gastric	stomach
24	chr18:29509600-29519400	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr18:29509600-29520800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr18:29509600-29520800	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr18:29509600-29522000	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr18:29509600-29522000	Weak transcription	Lung	lung
29	chr18:29510000-29520800	Weak transcription	Duodenum Mucosa	Duodenum
30	chr18:29510200-29519200	Weak transcription	HepG2	liver
31	chr18:29510200-29519400	Weak transcription	Adipose Nuclei	Adipose
32	chr18:29510200-29521800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr18:29511200-29521600	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr18:29511400-29521000	Weak transcription	Placenta	Placenta
35	chr18:29511400-29521200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr18:29511600-29521400	Weak transcription	NHLF	lung
37	chr18:29511800-29519400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr18:29511800-29519400	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr18:29511800-29519600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr18:29511800-29520800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr18:29511800-29520800	Weak transcription	Colon Smooth Muscle	Colon
42	chr18:29511800-29521000	Weak transcription	NH-A	brain
43	chr18:29511800-29521400	Weak transcription	Fetal Kidney	kidney
44	chr18:29511800-29521400	Weak transcription	HSMM	muscle
45	chr18:29511800-29521400	Weak transcription	NHDF-Ad	bronchial
46	chr18:29512000-29519200	Weak transcription	K562	blood
47	chr18:29512000-29519400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr18:29512000-29519800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr18:29512000-29520400	Weak transcription	Primary hematopoietic stem cells	blood
50	chr18:29512000-29520800	Weak transcription	Brain Substantia Nigra	brain

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