The 2.0 version of rSNPBase

Variant report

Variant rs71362683
Chromosome Location chr19:44850314-44850315
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:40 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:44823200-44856200 ZNF genes & repeats Liver Liver
2 chr19:44828600-44851000 ZNF genes & repeats Breast Myoepithelial Primary Cells Breast
3 chr19:44830800-44850400 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
4 chr19:44837400-44851000 ZNF genes & repeats Ovary ovary
5 chr19:44840800-44860000 Weak transcription NHDF-Ad bronchial
6 chr19:44844200-44859600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
7 chr19:44844200-44859800 Weak transcription Osteobl bone
8 chr19:44844800-44851000 Weak transcription Muscle Satellite Cultured Cells --
9 chr19:44844800-44853000 Weak transcription HSMMtube muscle
10 chr19:44845000-44860000 Weak transcription Placenta Amnion Placenta Amnion
11 chr19:44845200-44860000 Weak transcription HSMM muscle
12 chr19:44845400-44859800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
13 chr19:44847000-44853200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
14 chr19:44847200-44850600 ZNF genes & repeats Pancreatic Islets Pancreatic Islet
15 chr19:44847400-44850400 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
16 chr19:44847400-44851400 ZNF genes & repeats Aorta Aorta
17 chr19:44847400-44855200 ZNF genes & repeats Duodenum Smooth Muscle Duodenum
18 chr19:44847800-44855400 Weak transcription Right Ventricle heart
19 chr19:44848000-44850600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
20 chr19:44848000-44851800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
21 chr19:44848200-44852200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
22 chr19:44848200-44853400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
23 chr19:44848200-44854800 Weak transcription Fetal Brain Male brain
24 chr19:44848600-44851000 Enhancers Brain Anterior Caudate brain
25 chr19:44849000-44851000 Weak transcription Fetal Adrenal Gland Adrenal Gland
26 chr19:44849000-44851400 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
27 chr19:44849000-44852200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
28 chr19:44849000-44852800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
29 chr19:44849200-44850400 ZNF genes & repeats Left Ventricle heart
30 chr19:44849200-44851000 Enhancers Brain Germinal Matrix brain
31 chr19:44849400-44850600 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
32 chr19:44849600-44850400 Flanking Active TSS Ganglion Eminence derived primary cultured neurospheres brain
33 chr19:44849600-44859800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
34 chr19:44849800-44850400 Flanking Active TSS Cortex derived primary cultured neurospheres brain
35 chr19:44850000-44850600 Active TSS Brain Substantia Nigra brain
36 chr19:44850000-44853400 Weak transcription Skeletal Muscle Male skeletal muscle
37 chr19:44850200-44850400 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
38 chr19:44850200-44850400 ZNF genes & repeats Esophagus oesophagus
39 chr19:44850200-44850400 Enhancers Fetal Heart heart
40 chr19:44850200-44850400 Enhancers NH-A brain

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Last update: Aug 31, 2015