Variant report

Variant	rs7136783
Chromosome Location	chr12:105954366-105954367
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11829257	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7298396	0.98[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs7304664	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7955835	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832507	chr12:105821685-106005186	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1039068	chr12:105935786-106211250	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105938800-105964600	Weak transcription	Aorta	Aorta
2	chr12:105945400-105955000	Weak transcription	HSMMtube	muscle
3	chr12:105948200-105955800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr12:105948400-105955800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr12:105949600-105955000	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr12:105949800-105955400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr12:105950000-105954600	Weak transcription	Hela-S3	cervix
8	chr12:105950000-105955400	Weak transcription	Right Atrium	heart
9	chr12:105950000-105956400	Strong transcription	HUVEC	blood vessel
10	chr12:105950200-105955400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr12:105951200-105955200	Weak transcription	HSMM	muscle
12	chr12:105951800-105955800	Weak transcription	Adipose Nuclei	Adipose
13	chr12:105952000-105955800	Weak transcription	Left Ventricle	heart
14	chr12:105954200-105955400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr12:105954200-105955400	ZNF genes & repeats	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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