Variant report

Variant	rs7137277
Chromosome Location	chr12:104294231-104294232
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs55711297	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs59465189	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60547737	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7300658	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34031	chr12:104114277-104298546	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
2	nsv560039	chr12:104177668-104455340	Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
3	esv2616568	chr12:104292875-104294553	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:104284000-104299600	Weak transcription	GM12878-XiMat	blood
2	chr12:104288400-104300000	Weak transcription	Brain Hippocampus Middle	brain
3	chr12:104293200-104294800	Enhancers	Primary T cells from cord blood	blood
4	chr12:104293800-104295400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr12:104294000-104295000	Enhancers	Primary T killer memory cells from peripheral blood	blood
6	chr12:104294200-104294400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr12:104294200-104295200	Enhancers	Primary T cells fromperipheralblood	blood
8	chr12:104294200-104295200	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr12:104294200-104295200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr12:104294200-104295200	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr12:104294200-104295200	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr12:104294200-104295200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr12:104294200-104295400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
14	chr12:104294200-104298600	Enhancers	Fetal Thymus	thymus
15	chr12:104294200-104299000	Enhancers	Thymus	Thymus

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links