Variant report

Variant	rs7138376
Chromosome Location	chr12:116986293-116986294
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs58702168	1.00[AMR][1000 genomes]
rs61075766	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899540	chr12:116920503-116999861	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:116978200-116989400	Weak transcription	Esophagus	oesophagus
2	chr12:116983200-116986800	Enhancers	K562	blood
3	chr12:116984200-116996800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr12:116984200-116997000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr12:116984800-116986800	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr12:116984800-116986800	Enhancers	Fetal Muscle Leg	muscle
7	chr12:116985000-116986800	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr12:116985000-116987000	Enhancers	Primary B cells from peripheral blood	blood
9	chr12:116985200-116986400	Enhancers	Fetal Muscle Trunk	muscle
10	chr12:116985200-116986600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr12:116985200-116986600	Enhancers	Fetal Brain Male	brain
12	chr12:116985400-116986400	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr12:116985400-116986400	Enhancers	Placenta	Placenta
14	chr12:116985400-116986600	Enhancers	Colon Smooth Muscle	Colon
15	chr12:116985400-116986800	Enhancers	Fetal Thymus	thymus
16	chr12:116985400-116986800	Enhancers	Spleen	Spleen
17	chr12:116985600-116986400	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr12:116985600-116986400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
19	chr12:116985600-116986600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
20	chr12:116985600-116986600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr12:116985600-116986600	Enhancers	Adipose Nuclei	Adipose
22	chr12:116985600-116986600	Enhancers	Fetal Brain Female	brain
23	chr12:116985600-116986600	Enhancers	Fetal Stomach	stomach
24	chr12:116985600-116986600	Enhancers	HSMMtube	muscle
25	chr12:116985800-116986400	Enhancers	Muscle Satellite Cultured Cells	--
26	chr12:116985800-116986600	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr12:116985800-116986600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr12:116985800-116986600	Enhancers	Fetal Lung	lung
29	chr12:116985800-116986600	Enhancers	Lung	lung
30	chr12:116985800-116986600	Enhancers	Psoas Muscle	Psoas
31	chr12:116985800-116986600	Enhancers	Thymus	Thymus
32	chr12:116985800-116986800	Enhancers	Fetal Kidney	kidney
33	chr12:116985800-116986800	Enhancers	Left Ventricle	heart
34	chr12:116985800-116986800	Enhancers	Ovary	ovary
35	chr12:116985800-116986800	Enhancers	Right Ventricle	heart
36	chr12:116985800-116986800	Enhancers	Sigmoid Colon	Sigmoid Colon
37	chr12:116985800-116986800	Enhancers	HSMM	muscle
38	chr12:116985800-116986800	Enhancers	NH-A	brain
39	chr12:116985800-116987000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr12:116986000-116986400	Flanking Active TSS	Primary B cells from cord blood	blood
41	chr12:116986000-116986400	Flanking Active TSS	Primary hematopoietic stem cells	blood
42	chr12:116986000-116986400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
43	chr12:116986000-116986400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
44	chr12:116986000-116986400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
45	chr12:116986000-116986400	Enhancers	Osteobl	bone
46	chr12:116986000-116986600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr12:116986000-116986600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr12:116986000-116986800	Enhancers	Aorta	Aorta
49	chr12:116986000-116986800	Enhancers	Rectal Smooth Muscle	rectum
50	chr12:116986000-116987000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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