Variant report

Variant	rs71386227
Chromosome Location	chr16:75067980-75067981
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:75067734..75069638-chr16:75098915..75101144,2	MCF-7	breast:
2	chr16:75066755..75069318-chr16:75075816..75077581,2	MCF-7	breast:
3	chr16:75031546..75033488-chr16:75065711..75068461,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000186187	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs72798700	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949374	chr16:74466960-75172358	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	nsv1061095	chr16:74519718-75407020	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	123 gene(s)	inside rSNPs	diseases
3	nsv532560	chr16:74692406-75411912	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	111 gene(s)	inside rSNPs	diseases
4	nsv431516	chr16:74840166-75099566	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv916502	chr16:74845880-75732365	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	131 gene(s)	inside rSNPs	diseases
6	nsv833280	chr16:74855811-75077227	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
7	nsv1066130	chr16:74983759-75231161	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
8	nsv1056082	chr16:75004990-75295847	Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Active TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
9	nsv906908	chr16:75025548-75123994	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:75035000-75074400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr16:75046200-75076600	Weak transcription	Gastric	stomach
3	chr16:75047000-75078000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr16:75055200-75081200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr16:75055400-75071400	Weak transcription	Duodenum Mucosa	Duodenum
6	chr16:75055400-75072000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr16:75055600-75071800	Weak transcription	Fetal Brain Male	brain
8	chr16:75058600-75070800	Weak transcription	Brain Hippocampus Middle	brain
9	chr16:75060000-75070800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr16:75060000-75071400	Weak transcription	Fetal Stomach	stomach
11	chr16:75060200-75076200	Weak transcription	Rectal Smooth Muscle	rectum
12	chr16:75060400-75068200	Weak transcription	Stomach Smooth Muscle	stomach
13	chr16:75060400-75068400	Weak transcription	Primary hematopoietic stem cells	blood
14	chr16:75060400-75069400	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr16:75060400-75070800	Weak transcription	HSMMtube	muscle
16	chr16:75060400-75071200	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr16:75060400-75074000	Weak transcription	Thymus	Thymus
18	chr16:75060800-75068600	Weak transcription	Lung	lung
19	chr16:75062000-75069600	Weak transcription	Psoas Muscle	Psoas
20	chr16:75062000-75070600	Weak transcription	Colon Smooth Muscle	Colon
21	chr16:75062000-75071600	Weak transcription	Fetal Lung	lung
22	chr16:75062000-75071600	Weak transcription	Right Ventricle	heart
23	chr16:75062000-75078800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr16:75062400-75069200	Weak transcription	Left Ventricle	heart
25	chr16:75062800-75069200	Weak transcription	Fetal Thymus	thymus
26	chr16:75062800-75071600	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr16:75064000-75069400	Weak transcription	K562	blood
28	chr16:75064000-75078600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr16:75064200-75068600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr16:75064200-75069600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr16:75064400-75078400	Weak transcription	Hela-S3	cervix
32	chr16:75064600-75070800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr16:75064800-75071200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr16:75064800-75071600	Weak transcription	Osteobl	bone
35	chr16:75064800-75078400	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr16:75065000-75071600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr16:75065000-75072200	Weak transcription	Primary T cells from cord blood	blood
38	chr16:75065600-75071200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr16:75065600-75071600	Weak transcription	Fetal Muscle Trunk	muscle
40	chr16:75066200-75068800	Strong transcription	Dnd41	blood
41	chr16:75066600-75069600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr16:75066800-75068200	Enhancers	GM12878-XiMat	blood
43	chr16:75066800-75070000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr16:75066800-75071400	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr16:75067000-75068400	Weak transcription	HepG2	liver
46	chr16:75067000-75069600	Weak transcription	Esophagus	oesophagus
47	chr16:75067200-75068600	Weak transcription	Primary neutrophils fromperipheralblood	blood
48	chr16:75067800-75076600	Weak transcription	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links