Variant report

Variant	rs71386950
Chromosome Location	chr16:72175927-72175928
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1065360	0.89[ASN][1000 genomes]
rs11554764	1.00[ASN][1000 genomes]
rs12923749	0.89[ASN][1000 genomes]
rs12925943	0.85[ASN][1000 genomes]
rs12926119	0.85[ASN][1000 genomes]
rs12926250	0.89[ASN][1000 genomes]
rs12927014	0.85[ASN][1000 genomes]
rs12928056	0.89[ASN][1000 genomes]
rs12933482	0.88[ASN][1000 genomes]
rs17590101	1.00[ASN][1000 genomes]
rs17604662	0.89[ASN][1000 genomes]
rs17604676	0.89[ASN][1000 genomes]
rs17666271	1.00[ASN][1000 genomes]
rs17667639	0.88[ASN][1000 genomes]
rs17667675	0.89[ASN][1000 genomes]
rs2021171	0.85[ASN][1000 genomes]
rs34139543	0.81[AMR][1000 genomes]
rs35079155	0.85[ASN][1000 genomes]
rs35448862	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35930480	0.81[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs36012445	0.88[ASN][1000 genomes]
rs36061252	0.85[ASN][1000 genomes]
rs36125653	1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs3815192	1.00[ASN][1000 genomes]
rs3852783	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4788606	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4788612	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55772151	1.00[ASN][1000 genomes]
rs56901884	0.92[ASN][1000 genomes]
rs59049640	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59958340	0.81[ASN][1000 genomes]
rs60449783	0.92[ASN][1000 genomes]
rs61060922	1.00[ASN][1000 genomes]
rs61258384	0.92[ASN][1000 genomes]
rs61404039	0.92[ASN][1000 genomes]
rs61733129	0.81[ASN][1000 genomes]
rs71386951	0.89[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs74029810	0.92[ASN][1000 genomes]
rs74029814	0.92[ASN][1000 genomes]
rs74029815	0.92[ASN][1000 genomes]
rs74029840	1.00[ASN][1000 genomes]
rs8182209	1.00[ASN][1000 genomes]
rs9652628	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948468	chr16:71727571-72651914	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
2	esv2758430	chr16:71976344-72274347	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
3	esv2758654	chr16:71976344-72274347	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv428329	chr16:71976344-72274347	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
5	nsv1060983	chr16:72074832-72791629	Genic enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
6	nsv534588	chr16:72078262-72287230	ZNF genes & repeats Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
7	nsv1060804	chr16:72078486-72791629	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:72172400-72193000	Weak transcription	HepG2	liver
2	chr16:72175400-72176000	Enhancers	Pancreatic Islets	Pancreatic Islet

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