Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11182536	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11182537	0.93[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11831885	0.97[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12296643	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12297797	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12299765	0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12300089	0.87[YRI][hapmap];0.88[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs12304042	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12304650	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs1376995	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1452258	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17094772	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58889339	0.83[AMR][1000 genomes]
rs61391734	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7294590	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7300240	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs7303239	0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7955046	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7958418	0.87[YRI][hapmap];0.88[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs7964112	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7964288	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049818	chr12:44486312-45133783	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44918600-44972000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr12:44936600-44944400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr12:44936800-44940000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr12:44937600-44940600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr12:44937600-44947600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr12:44939800-44940200	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr12:44939800-44940200	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr12:44939800-44940200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr12:44939800-44941000	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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