Variant report

Variant	rs7139164
Chromosome Location	chr12:40593944-40593945
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17491786	1.00[AMR][1000 genomes]
rs17519804	1.00[AMR][1000 genomes]
rs56787666	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044685	chr12:40574460-40771612	Enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:40590200-40595400	Weak transcription	Primary B cells from cord blood	blood
2	chr12:40590400-40595200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr12:40590400-40595600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr12:40590400-40596600	Weak transcription	Primary B cells from peripheral blood	blood
5	chr12:40591000-40595600	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr12:40591600-40594600	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr12:40592200-40595200	Weak transcription	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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