Variant report

Variant	rs7139390
Chromosome Location	chr13:110635528-110635529
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11843976	1.00[CEU][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12427614	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12429986	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12430541	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12431015	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12431261	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4357806	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4506760	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4612922	0.84[CEU][hapmap];0.84[CHB][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs58866924	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72638440	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9588059	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832719	chr13:110512259-110655883	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1049593	chr13:110615494-110725945	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110633800-110638200	Enhancers	Fetal Brain Male	brain
2	chr13:110634000-110635800	Enhancers	Fetal Brain Female	brain
3	chr13:110635000-110635600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr13:110635400-110636600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr13:110635400-110636800	Enhancers	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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