Variant report

Variant	rs7139506
Chromosome Location	chr13:80358456-80358457
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1335287	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1932188	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2027149	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2027151	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5003301	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7339390	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900588	chr13:80216846-80421340	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv900590	chr13:80342186-80421340	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80349800-80358600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr13:80353200-80358800	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr13:80357000-80359200	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr13:80357000-80370400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr13:80357200-80358600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr13:80357400-80358600	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr13:80357400-80358600	Enhancers	Fetal Heart	heart
8	chr13:80357600-80358600	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr13:80357600-80359000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr13:80357600-80359000	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr13:80357600-80362200	Weak transcription	HUVEC	blood vessel
12	chr13:80357800-80359400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr13:80358000-80358800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr13:80358000-80359800	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr13:80358000-80360400	Weak transcription	HSMM	muscle
16	chr13:80358400-80358600	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr13:80358400-80358600	Enhancers	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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