Variant report

Variant	rs7140680
Chromosome Location	chr14:69450505-69450506
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1007407	0.82[CEU][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1275193	0.81[AMR][1000 genomes]
rs1275195	0.88[JPT][hapmap]
rs173321	0.88[JPT][hapmap]
rs1884633	0.86[CHB][hapmap]
rs2012820	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs242103	0.83[AMR][1000 genomes]
rs4243632	0.84[EUR][1000 genomes]
rs4902684	0.98[ASN][1000 genomes]
rs68006628	0.98[ASN][1000 genomes]
rs7159001	0.88[CHB][hapmap]
rs8016537	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832823	chr14:69388853-69567638	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69447000-69471400	Weak transcription	Esophagus	oesophagus
2	chr14:69447200-69453000	Weak transcription	K562	blood
3	chr14:69447400-69454400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr14:69448000-69450600	Enhancers	HepG2	liver
5	chr14:69448000-69453000	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr14:69448400-69453000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr14:69448400-69453400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr14:69448400-69454400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr14:69448800-69454000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr14:69449000-69454600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr14:69449200-69450600	Enhancers	Liver	Liver
12	chr14:69449200-69454400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr14:69449200-69454400	Weak transcription	NHEK	skin
14	chr14:69449200-69458400	Weak transcription	HUVEC	blood vessel
15	chr14:69449400-69452200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr14:69449400-69453000	Weak transcription	Aorta	Aorta
17	chr14:69449400-69454000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr14:69449400-69454400	Weak transcription	HMEC	breast
19	chr14:69449400-69454600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr14:69450000-69452800	Weak transcription	HSMM	muscle
21	chr14:69450000-69453200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr14:69450000-69454200	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr14:69450000-69454400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr14:69450000-69454400	Weak transcription	Pancreas	Pancrea
25	chr14:69450000-69454600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr14:69450000-69455400	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr14:69450200-69453000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr14:69450200-69455200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr14:69450400-69453400	Weak transcription	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links