Variant report

Variant	rs7140706
Chromosome Location	chr14:21134302-21134303
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:21132786..21134796-chr14:21137169..21140063,2	MCF-7	breast:
2	chr14:21133424..21135225-chr14:21137290..21138878,2	K562	blood:
3	chr14:21132804..21134469-chr14:21149623..21152294,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258818	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2228653	1.00[AMR][1000 genomes]
rs56333311	1.00[EUR][1000 genomes]
rs7160116	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043923	chr14:20338742-21336425	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	203 gene(s)	inside rSNPs	diseases
2	nsv541970	chr14:20338742-21336425	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	203 gene(s)	inside rSNPs	diseases
3	esv21015	chr14:20800765-21257878	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
4	nsv901468	chr14:20997221-21149785	Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv1051489	chr14:21026592-21214763	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
6	nsv1203	chr14:21120868-21166077	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
7	nsv1045004	chr14:21124345-21180397	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
8	nsv541975	chr14:21124345-21180397	Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:21131800-21135200	Weak transcription	Gastric	stomach
2	chr14:21131800-21136000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr14:21132000-21135800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr14:21132000-21135800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr14:21132000-21136000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr14:21132000-21136000	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr14:21132000-21136000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr14:21132000-21136200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr14:21132000-21136200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr14:21132200-21135000	Active TSS	GM12878-XiMat	blood
11	chr14:21132200-21136000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr14:21132200-21136000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr14:21132200-21136000	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr14:21132200-21136400	Enhancers	Primary B cells from peripheral blood	blood
15	chr14:21132400-21136000	Enhancers	Primary B cells from cord blood	blood
16	chr14:21132600-21135600	Weak transcription	Spleen	Spleen
17	chr14:21132600-21135800	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr14:21132600-21136000	Weak transcription	Primary hematopoietic stem cells	blood
19	chr14:21132600-21136000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr14:21132800-21136000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr14:21133600-21135600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr14:21133600-21140000	Weak transcription	Duodenum Mucosa	Duodenum
23	chr14:21133800-21135600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr14:21134000-21135600	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr14:21134000-21137400	Enhancers	HepG2	liver

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