Variant report

Variant	rs71411669
Chromosome Location	chr14:43531692-43531693
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10498379	0.86[ASN][1000 genomes]
rs12432952	1.00[AFR][1000 genomes]
rs12433503	1.00[AFR][1000 genomes]
rs12888741	0.86[ASN][1000 genomes]
rs12891278	1.00[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs12892430	1.00[AFR][1000 genomes]
rs12893198	1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs12895517	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34501824	0.86[ASN][1000 genomes]
rs34773045	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34778903	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34787221	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34791257	1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs34808750	0.86[ASN][1000 genomes]
rs34986764	1.00[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs35021222	1.00[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs35156144	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35577171	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35703406	1.00[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs35969630	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs71411664	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs71411666	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs71411667	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs71411668	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs71411678	0.86[ASN][1000 genomes]
rs71411681	0.82[ASN][1000 genomes]
rs71411682	1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs71411683	1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs71411686	1.00[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs71411688	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564618	chr14:43056649-43773651	Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv430996	chr14:43140250-43829050	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1048877	chr14:43167329-43863100	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1049409	chr14:43342305-43978776	Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv527004	chr14:43392107-43555789	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1049284	chr14:43400494-43948072	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv901765	chr14:43463396-43537857	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv832782	chr14:43470370-43620110	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1035264	chr14:43470467-43901187	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv542064	chr14:43470467-43901187	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv564626	chr14:43480483-43606391	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv901767	chr14:43480483-43630817	Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv901769	chr14:43485632-43555789	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv901770	chr14:43485632-43589221	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv901771	chr14:43485632-43791937	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
16	nsv901773	chr14:43488875-43544443	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv901774	chr14:43490932-43537857	Active TSS Flanking Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv564627	chr14:43490932-43551198	Enhancers Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv901775	chr14:43490932-43744480	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
20	nsv1054469	chr14:43496577-43727956	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
21	nsv1255	chr14:43507697-43545773	Enhancers Flanking Active TSS Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
22	esv1821527	chr14:43513478-44010789	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
23	esv3345429	chr14:43523251-43549029	Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases
24	nsv974332	chr14:43524463-43546649	Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:43531400-43532000	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr14:43531400-43532000	Active TSS	HUES6 Cell Line	embryonic stem cell
3	chr14:43531400-43532000	Active TSS	A549	lung
4	chr14:43531600-43532000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
5	chr14:43531600-43532000	Active TSS	H9 Cell Line	embryonic stem cell
6	chr14:43531600-43532000	Active TSS	HUES48 Cell Line	embryonic stem cell
7	chr14:43531600-43532000	Active TSS	HUES64 Cell Line	embryonic stem cell
8	chr14:43531600-43532000	Active TSS	iPS-15b Cell Line	embryonic stem cell
9	chr14:43531600-43532000	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr14:43531600-43532000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links