Variant report

Variant	rs7141186
Chromosome Location	chr14:24593244-24593245
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:24591757..24594366-chr14:24656404..24658737,2	MCF-7	breast:
2	chr14:24592537..24594703-chr14:24595587..24598075,2	MCF-7	breast:
3	chr14:24590729..24593546-chr14:24599183..24601236,2	K562	blood:
4	chr14:24520127..24522480-chr14:24592615..24594893,2	MCF-7	breast:
5	chr14:24581290..24596396-chr14:24599989..24617678,100	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100911	Chromatin interaction
ENSG00000100908	Chromatin interaction
ENSG00000092098	Chromatin interaction
ENSG00000196497	Chromatin interaction
ENSG00000092010	Chromatin interaction
ENSG00000139914	Chromatin interaction
ENSG00000259321	Chromatin interaction
ENSG00000186648	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1043612	1.00[LWK][hapmap]
rs17101262	1.00[LWK][hapmap]
rs7147300	1.00[LWK][hapmap]
rs7155723	1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3405661	chr14:24189883-24670942	Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	131 gene(s)	inside rSNPs	diseases
2	esv1827678	chr14:24520544-24663325	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	106 gene(s)	inside rSNPs	diseases
3	nsv456168	chr14:24525634-24618859	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
4	nsv564057	chr14:24525634-24618859	Weak transcription Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
5	nsv869985	chr14:24578013-24652669	Genic enhancers Flanking Active TSS Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
6	nsv901498	chr14:24591892-24662177	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24585600-24593400	Strong transcription	HUES6 Cell Line	embryonic stem cell
2	chr14:24585600-24593600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr14:24585800-24593600	Strong transcription	HUES48 Cell Line	embryonic stem cell
4	chr14:24585800-24593600	Strong transcription	Cortex derived primary cultured neurospheres	brain
5	chr14:24585800-24593800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr14:24585800-24593800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr14:24585800-24594200	Strong transcription	Fetal Muscle Trunk	muscle
8	chr14:24585800-24594200	Strong transcription	Fetal Stomach	stomach
9	chr14:24586000-24593400	Strong transcription	Esophagus	oesophagus
10	chr14:24586000-24593600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
11	chr14:24586000-24593800	Strong transcription	Duodenum Smooth Muscle	Duodenum
12	chr14:24586000-24594600	Strong transcription	Fetal Muscle Leg	muscle
13	chr14:24586200-24593400	Strong transcription	Brain Cingulate Gyrus	brain
14	chr14:24586200-24593600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr14:24586200-24593600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr14:24586200-24593800	Strong transcription	Primary hematopoietic stem cells	blood
17	chr14:24586200-24593800	Strong transcription	Brain Anterior Caudate	brain
18	chr14:24586200-24593800	Strong transcription	Skeletal Muscle Male	skeletal muscle
19	chr14:24586200-24593800	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr14:24586200-24594000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr14:24586200-24594000	Strong transcription	Brain Hippocampus Middle	brain
22	chr14:24586200-24594000	Strong transcription	Rectal Mucosa Donor 29	rectum
23	chr14:24586200-24594200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr14:24586200-24594400	Strong transcription	Right Ventricle	heart
25	chr14:24586200-24594600	Strong transcription	Primary T cells from cord blood	blood
26	chr14:24586200-24594800	Strong transcription	Primary monocytes fromperipheralblood	blood
27	chr14:24586200-24599800	Weak transcription	Right Atrium	heart
28	chr14:24586400-24593400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr14:24586400-24593400	Strong transcription	Brain Germinal Matrix	brain
30	chr14:24586400-24593600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr14:24586400-24593600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr14:24586400-24593600	Strong transcription	Brain Inferior Temporal Lobe	brain
33	chr14:24586400-24593600	Strong transcription	Dnd41	blood
34	chr14:24586400-24593600	Strong transcription	NHEK	skin
35	chr14:24586400-24593800	Strong transcription	Duodenum Mucosa	Duodenum
36	chr14:24586400-24594400	Strong transcription	Left Ventricle	heart
37	chr14:24586600-24593400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr14:24586600-24593400	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr14:24586600-24593400	Strong transcription	Primary T killer memory cells from peripheral blood	blood
40	chr14:24586600-24593600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr14:24586600-24593600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr14:24586600-24593600	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr14:24586600-24593600	Strong transcription	Stomach Smooth Muscle	stomach
44	chr14:24586600-24593800	Strong transcription	Aorta	Aorta
45	chr14:24586600-24593800	Strong transcription	Rectal Mucosa Donor 31	rectum
46	chr14:24586600-24593800	Strong transcription	Osteobl	bone
47	chr14:24586600-24594000	Strong transcription	Adipose Nuclei	Adipose
48	chr14:24586600-24594200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr14:24586600-24594400	Strong transcription	Gastric	stomach
50	chr14:24586600-24595600	Strong transcription	Sigmoid Colon	Sigmoid Colon

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