Variant report

Variant	rs71412566
Chromosome Location	chr15:93249466-93249467
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:93162536..93164943-chr15:93249392..93251363,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12439654	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12440201	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12442362	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12442555	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12906973	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1561304	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17648050	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1866171	0.81[ASN][1000 genomes]
rs34188575	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34327113	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34913881	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35277112	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35351684	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35839849	0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35984805	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4777729	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4777730	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4778033	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs58894958	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs66899661	0.86[ASN][1000 genomes]
rs66934257	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs67759391	0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs71412559	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71412560	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71412561	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71412562	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71412563	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71412564	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71412567	0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs71412568	0.83[EUR][1000 genomes]
rs71412570	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs71412571	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
3	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
4	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
5	nsv1040501	chr15:93177153-93286393	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93245600-93257400	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr15:93246200-93257400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr15:93247400-93253400	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr15:93248800-93249600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:93248800-93249600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr15:93248800-93249600	Enhancers	HUVEC	blood vessel
7	chr15:93249000-93249600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr15:93249000-93249800	Enhancers	Brain Hippocampus Middle	brain
9	chr15:93249000-93254600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr15:93249200-93249600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr15:93249200-93249600	Enhancers	Brain Cingulate Gyrus	brain
12	chr15:93249200-93250200	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr15:93249200-93250800	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr15:93249400-93249600	Enhancers	Brain Anterior Caudate	brain
15	chr15:93249400-93250800	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr15:93249400-93257400	Weak transcription	Brain Substantia Nigra	brain

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