Variant report

Variant	rs7141453
Chromosome Location	chr14:55047949-55047950
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:55046162..55049434-chr14:55049873..55053073,4	MCF-7	breast:
2	chr14:55047327..55050200-chr14:55051557..55053516,2	K562	blood:
3	chr14:55031973..55037489-chr14:55047711..55052059,6	MCF-7	breast:
4	chr14:55044254..55046177-chr14:55047244..55049033,2	MCF-7	breast:
5	chr14:55046614..55048948-chr14:55068040..55069942,2	K562	blood:
6	chr14:55045663..55048624-chr14:55058261..55060394,2	MCF-7	breast:
7	chr14:55037874..55042075-chr14:55045294..55049013,4	MCF-7	breast:
8	chr14:55041845..55044916-chr14:55047356..55049465,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000020577	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11626705	0.91[CHB][hapmap];0.80[JPT][hapmap];0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1187589	0.87[ASN][1000 genomes]
rs4901522	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4901523	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.93[MEX][hapmap];0.89[TSI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs66466453	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs66979557	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7160154	0.94[CEU][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7141453	SLC22A9	trans	brain	seeQTL
rs7141453	PTGER2	cis	cerebellum	SCAN

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55034800-55050400	Weak transcription	Gastric	stomach
2	chr14:55036200-55073000	Weak transcription	Pancreas	Pancrea
3	chr14:55036400-55049000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr14:55036400-55058200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr14:55037000-55058600	Weak transcription	Spleen	Spleen
6	chr14:55040200-55050800	Weak transcription	Fetal Intestine Large	intestine
7	chr14:55041000-55050200	Weak transcription	Liver	Liver
8	chr14:55041000-55058400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr14:55041200-55050600	Weak transcription	Brain Angular Gyrus	brain
10	chr14:55041200-55051000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr14:55041400-55051000	Weak transcription	Primary B cells from cord blood	blood
12	chr14:55041400-55056800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr14:55041400-55057600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr14:55043400-55055000	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr14:55043400-55055600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr14:55043600-55064600	Weak transcription	K562	blood
17	chr14:55044000-55055800	Weak transcription	HMEC	breast
18	chr14:55044000-55057800	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr14:55044400-55048200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr14:55044400-55056800	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr14:55044400-55058000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr14:55044600-55048000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr14:55044600-55053000	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr14:55044800-55049000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr14:55044800-55056800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr14:55044800-55057800	Weak transcription	Brain Substantia Nigra	brain
27	chr14:55045000-55048000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr14:55045000-55048200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr14:55045000-55049000	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr14:55045000-55049000	Weak transcription	NHDF-Ad	bronchial
31	chr14:55045000-55052400	Weak transcription	Fetal Lung	lung
32	chr14:55045000-55055400	Weak transcription	HSMM	muscle
33	chr14:55045000-55055600	Weak transcription	Osteobl	bone
34	chr14:55045000-55055800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr14:55045000-55055800	Weak transcription	NH-A	brain
36	chr14:55045000-55056800	Weak transcription	Stomach Smooth Muscle	stomach
37	chr14:55045000-55057200	Weak transcription	Fetal Muscle Leg	muscle
38	chr14:55045000-55060800	Weak transcription	Adipose Nuclei	Adipose
39	chr14:55045000-55066800	Weak transcription	Brain Anterior Caudate	brain
40	chr14:55045200-55056200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr14:55045200-55056600	Weak transcription	HSMMtube	muscle
42	chr14:55045200-55066600	Weak transcription	Fetal Stomach	stomach
43	chr14:55045600-55051000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr14:55045800-55048200	Enhancers	Skeletal Muscle Female	skeletal muscle
45	chr14:55046000-55048200	Enhancers	Fetal Heart	heart
46	chr14:55046200-55048600	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr14:55046400-55048200	Enhancers	Skeletal Muscle Male	skeletal muscle
48	chr14:55046600-55048000	Strong transcription	NHEK	skin
49	chr14:55046600-55048200	Strong transcription	Fetal Muscle Trunk	muscle
50	chr14:55046600-55049000	Weak transcription	Ovary	ovary

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