Variant report

Variant	rs7141596
Chromosome Location	chr14:77725004-77725005
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs55841851	1.00[EUR][1000 genomes]
rs7144159	1.00[EUR][1000 genomes]
rs8017563	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431017	chr14:76938089-77854647	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	107 gene(s)	inside rSNPs	diseases
2	nsv1361	chr14:77707417-77753024	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
3	nsv902104	chr14:77720741-77756321	Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77697600-77726800	Weak transcription	Brain Substantia Nigra	brain
2	chr14:77709800-77729600	Weak transcription	Fetal Brain Male	brain
3	chr14:77711200-77731000	Weak transcription	Spleen	Spleen
4	chr14:77713200-77726800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr14:77718400-77726800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr14:77720800-77725600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr14:77720800-77725800	Weak transcription	Esophagus	oesophagus
8	chr14:77720800-77726800	Weak transcription	Brain Anterior Caudate	brain
9	chr14:77720800-77727000	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr14:77723000-77734000	Weak transcription	Gastric	stomach
11	chr14:77724000-77725800	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr14:77724400-77725800	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr14:77725000-77727000	Weak transcription	Brain Germinal Matrix	brain
14	chr14:77725000-77730400	Weak transcription	Fetal Brain Female	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links