Variant report

Variant	rs714161
Chromosome Location	chr7:12090999-12091000
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11769147	0.82[EUR][1000 genomes]
rs11769175	0.85[EUR][1000 genomes]
rs12531628	0.87[EUR][1000 genomes]
rs12536802	0.87[EUR][1000 genomes]
rs12536861	0.87[EUR][1000 genomes]
rs12699300	0.87[EUR][1000 genomes]
rs12699302	0.87[EUR][1000 genomes]
rs12699303	0.87[EUR][1000 genomes]
rs13311454	0.87[EUR][1000 genomes]
rs17582385	0.87[EUR][1000 genomes]
rs17589439	0.87[EUR][1000 genomes]
rs17648848	0.87[EUR][1000 genomes]
rs17648860	0.87[EUR][1000 genomes]
rs17648896	0.87[EUR][1000 genomes]
rs17649533	0.87[EUR][1000 genomes]
rs35696558	0.87[EUR][1000 genomes]
rs6943244	0.87[EUR][1000 genomes]
rs6960929	0.87[EUR][1000 genomes]
rs6961827	0.87[EUR][1000 genomes]
rs9690362	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606199	chr7:11506143-12486659	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv887614	chr7:11778424-12211198	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv2758103	chr7:11927239-12109419	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2759510	chr7:11927239-12109419	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv830906	chr7:12001764-12177869	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1023608	chr7:12064114-12247520	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:12088200-12095400	Weak transcription	HUES64 Cell Line	embryonic stem cell

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