Variant report

Variant	rs71416845
Chromosome Location	chr14:81125039-81125040
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1530767	0.80[AFR][1000 genomes]
rs4903928	1.00[ASN][1000 genomes]
rs4903929	1.00[ASN][1000 genomes]
rs71416843	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71416844	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv565290	chr14:81085129-81230117	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1039554	chr14:81113167-81156335	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
4	nsv1051964	chr14:81113167-81156847	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81106200-81135400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:81108200-81145800	Weak transcription	Fetal Thymus	thymus
3	chr14:81120800-81130600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr14:81122600-81129400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr14:81124000-81125200	Enhancers	Brain Angular Gyrus	brain
6	chr14:81124200-81126000	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr14:81124200-81126200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr14:81124200-81126200	Enhancers	Brain Cingulate Gyrus	brain
9	chr14:81124200-81126400	Enhancers	HepG2	liver
10	chr14:81124400-81125400	Enhancers	Brain Anterior Caudate	brain
11	chr14:81124400-81125600	Enhancers	Brain Germinal Matrix	brain
12	chr14:81124400-81126000	Enhancers	Brain Substantia Nigra	brain
13	chr14:81124600-81125400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr14:81124600-81125800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr14:81124600-81133000	Enhancers	Dnd41	blood
16	chr14:81125000-81125200	Enhancers	Brain Hippocampus Middle	brain
17	chr14:81125000-81125200	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr14:81125000-81125400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr14:81125000-81125400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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