Variant report

Variant	rs71420801
Chromosome Location	chr2:211433697-211433698
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs13031200	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs33949976	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs34484159	1.00[AFR][1000 genomes]
rs71420802	1.00[AFR][1000 genomes]
rs71422703	1.00[AFR][1000 genomes]
rs71422704	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3398091	chr2:211315261-211634200	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:211418600-211443200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:211430800-211438000	Weak transcription	Fetal Kidney	kidney
3	chr2:211431000-211436200	Weak transcription	Aorta	Aorta
4	chr2:211432400-211434400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr2:211432600-211434000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr2:211432800-211434400	Genic enhancers	Fetal Intestine Large	intestine
7	chr2:211433000-211438400	Genic enhancers	Liver	Liver
8	chr2:211433200-211434200	Strong transcription	Hela-S3	cervix
9	chr2:211433200-211437600	Weak transcription	Duodenum Mucosa	Duodenum
10	chr2:211433200-211442200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr2:211433200-211442200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr2:211433600-211434400	Enhancers	Fetal Intestine Small	intestine

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links