Variant report

Variant	rs71421373
Chromosome Location	chr14:67934831-67934832
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:67914287..67914992-chr14:67934220..67935041,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10139090	1.00[ASN][1000 genomes]
rs11622661	1.00[ASN][1000 genomes]
rs11851098	1.00[ASN][1000 genomes]
rs28558685	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045518	chr14:67529049-67959582	Strong transcription Bivalent Enhancer Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv456331	chr14:67732861-68103780	Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv564961	chr14:67732861-68103780	Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	nsv470651	chr14:67732861-68113293	Active TSS Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
5	nsv902066	chr14:67873128-68103780	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
6	nsv1048046	chr14:67932876-67958467	Genic enhancers Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:67927800-67935400	Enhancers	Fetal Thymus	thymus
2	chr14:67928200-67935200	Enhancers	Thymus	Thymus
3	chr14:67928800-67946600	Weak transcription	Pancreas	Pancrea
4	chr14:67929600-67942600	Weak transcription	Lung	lung
5	chr14:67929800-67938600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr14:67930400-67935400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr14:67931200-67939600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr14:67931400-67939000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr14:67931800-67938600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr14:67932000-67939600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr14:67932800-67937600	Weak transcription	Primary T cells from cord blood	blood
12	chr14:67932800-67939200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr14:67932800-67940000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr14:67933000-67954400	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr14:67933200-67939400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr14:67933800-67935200	Enhancers	Primary T helper naive cells from peripheral blood	blood
17	chr14:67933800-67935400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr14:67933800-67935400	Enhancers	Fetal Intestine Large	intestine
19	chr14:67933800-67935600	Enhancers	Fetal Intestine Small	intestine
20	chr14:67934000-67935200	Enhancers	Primary T cells fromperipheralblood	blood
21	chr14:67934000-67935200	Flanking Active TSS	Duodenum Mucosa	Duodenum
22	chr14:67934000-67935400	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr14:67934000-67936400	Weak transcription	Small Intestine	intestine
24	chr14:67934400-67935000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr14:67934400-67935200	Enhancers	Colonic Mucosa	Colon
26	chr14:67934400-67935200	Flanking Active TSS	HepG2	liver
27	chr14:67934400-67939400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr14:67934600-67935200	Active TSS	Rectal Mucosa Donor 29	rectum
29	chr14:67934600-67938800	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr14:67934600-67939000	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr14:67934600-67950600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr14:67934800-67939200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr14:67934800-67946800	Weak transcription	Placenta	Placenta

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