Variant report

Variant	rs7142519
Chromosome Location	chr14:84504179-84504180
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10134358	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10145436	0.86[AFR][1000 genomes]
rs17119559	0.81[AFR][1000 genomes]
rs58445096	0.93[AFR][1000 genomes]
rs6574768	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7140689	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7142486	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7161645	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1382	chr14:84487547-84532237	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:84502200-84504400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr14:84502400-84504200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr14:84502600-84504200	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr14:84502800-84504200	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr14:84503000-84504200	Enhancers	Hela-S3	cervix
6	chr14:84503600-84504200	Enhancers	Fetal Heart	heart
7	chr14:84503800-84504200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr14:84503800-84504200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr14:84504000-84504200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links