Variant report

Variant	rs71425684
Chromosome Location	chr2:181694157-181694158
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12999660	0.83[EUR][1000 genomes]
rs13419915	0.83[EUR][1000 genomes]
rs34332373	1.00[EUR][1000 genomes]
rs35545912	1.00[EUR][1000 genomes]
rs71425685	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834475	chr2:181537463-181724891	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:181688800-181694200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr2:181693400-181694800	Enhancers	NHEK	skin
3	chr2:181693400-181695000	Enhancers	Hela-S3	cervix
4	chr2:181693600-181695000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr2:181693600-181695000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr2:181693800-181695000	Enhancers	HMEC	breast
7	chr2:181694000-181694800	Enhancers	A549	lung
8	chr2:181694000-181694800	Enhancers	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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