Variant report

Variant	rs7142580
Chromosome Location	chr14:67385546-67385547
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs8022801	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3385263	chr14:66514718-67511481	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv525460	chr14:66851185-67626594	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	esv1834170	chr14:67103140-67527235	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2829998	chr14:67103579-67626594	Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv1838724	chr14:67232573-67527235	Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv2763071	chr14:67284476-67597237	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv902058	chr14:67310195-67760538	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
8	nsv902059	chr14:67352226-67760538	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
9	esv2751285	chr14:67364747-67886781	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:67371600-67389200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr14:67372600-67393600	Weak transcription	Fetal Brain Female	brain
3	chr14:67373000-67407200	Weak transcription	Gastric	stomach
4	chr14:67373200-67394600	Weak transcription	Esophagus	oesophagus
5	chr14:67373200-67406200	Weak transcription	Pancreas	Pancrea
6	chr14:67373400-67398600	Weak transcription	GM12878-XiMat	blood
7	chr14:67376600-67389400	Weak transcription	Fetal Kidney	kidney
8	chr14:67378400-67391000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr14:67380600-67406400	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr14:67381000-67398400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr14:67381000-67404800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr14:67381000-67406200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr14:67381200-67389200	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr14:67381400-67387400	Weak transcription	Duodenum Mucosa	Duodenum
15	chr14:67381400-67389600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr14:67381400-67404600	Weak transcription	Stomach Smooth Muscle	stomach
17	chr14:67381400-67406200	Weak transcription	Right Ventricle	heart
18	chr14:67381400-67407200	Weak transcription	Fetal Muscle Leg	muscle
19	chr14:67381400-67408000	Weak transcription	Brain Anterior Caudate	brain
20	chr14:67381400-67411000	Weak transcription	Brain Angular Gyrus	brain
21	chr14:67381600-67389400	Weak transcription	Brain Hippocampus Middle	brain
22	chr14:67381600-67404400	Weak transcription	Psoas Muscle	Psoas
23	chr14:67381800-67390600	Weak transcription	Fetal Lung	lung
24	chr14:67381800-67398600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr14:67381800-67406200	Weak transcription	Rectal Smooth Muscle	rectum
26	chr14:67382000-67386800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr14:67382000-67398600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr14:67382000-67406200	Weak transcription	Brain Cingulate Gyrus	brain
29	chr14:67382000-67406200	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr14:67382200-67385600	Weak transcription	Fetal Brain Male	brain
31	chr14:67382200-67398800	Weak transcription	Aorta	Aorta
32	chr14:67382400-67404400	Weak transcription	Primary T helper cells fromperipheralblood	blood
33	chr14:67382800-67385600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
34	chr14:67383200-67392600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr14:67383600-67408000	Weak transcription	Primary T cells from cord blood	blood
36	chr14:67383600-67410000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr14:67383800-67409000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr14:67384000-67387200	Strong transcription	Dnd41	blood
39	chr14:67384000-67393800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr14:67384000-67406800	Weak transcription	Brain Substantia Nigra	brain
41	chr14:67384200-67387200	Weak transcription	Fetal Heart	heart
42	chr14:67384200-67392400	Weak transcription	Primary hematopoietic stem cells	blood
43	chr14:67384200-67406800	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr14:67384400-67386400	Enhancers	HepG2	liver
45	chr14:67384600-67386000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr14:67384800-67389200	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr14:67385000-67389400	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr14:67385000-67398400	Weak transcription	A549	lung
49	chr14:67385000-67406400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr14:67385000-67406400	Weak transcription	Small Intestine	intestine

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