Variant report

Variant	rs7142753
Chromosome Location	chr14:81307218-81307219
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1016507	0.84[ASN][1000 genomes]
rs12432357	0.87[ASN][1000 genomes]
rs12434564	0.86[ASN][1000 genomes]
rs12878945	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12880075	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12888082	0.87[ASN][1000 genomes]
rs1458993	0.87[ASN][1000 genomes]
rs17542615	0.87[ASN][1000 genomes]
rs17542712	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1797670	0.84[ASN][1000 genomes]
rs2044738	0.84[ASN][1000 genomes]
rs228110	0.84[ASN][1000 genomes]
rs228111	0.84[ASN][1000 genomes]
rs35540104	0.84[ASN][1000 genomes]
rs7143407	0.84[ASN][1000 genomes]
rs7148618	0.87[ASN][1000 genomes]
rs8003784	0.87[ASN][1000 genomes]
rs8006507	0.87[ASN][1000 genomes]
rs8022788	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv832840	chr14:81270033-81423583	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81285000-81310200	Weak transcription	A549	lung
2	chr14:81285000-81311200	Weak transcription	Ovary	ovary
3	chr14:81285200-81315600	Weak transcription	HSMM	muscle
4	chr14:81288000-81307800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr14:81290600-81311200	Weak transcription	Fetal Stomach	stomach
6	chr14:81291600-81310000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr14:81291600-81310800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr14:81291600-81331000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr14:81291800-81307800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr14:81291800-81344200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr14:81292200-81328200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr14:81294400-81309000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr14:81295600-81308800	Weak transcription	Brain Substantia Nigra	brain
14	chr14:81304800-81314400	Weak transcription	Thymus	Thymus
15	chr14:81305200-81321600	Weak transcription	Fetal Thymus	thymus
16	chr14:81306600-81311200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr14:81307000-81310800	Weak transcription	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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