Variant report

Variant	rs7143436
Chromosome Location	chr14:45725503-45725504
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:2)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr14:45725455-45725505	HMEC	breast:	n/a
2	chr14:45725455-45725505	HIPEpiC	eye:	n/a
3	chr14:45725455-45725505	GM12892	blood:	n/a
4	chr14:45725455-45725505	A549	lung:	n/a
5	chr14:45725455-45725505	HRE	kidney:	n/a
6	chr14:45725455-45725505	PrEC	prostate:	n/a
7	chr14:45725455-45725505	PFSK-1	brain:	n/a
8	chr14:45725455-45725505	HAEpiC	amniotic membrane:	n/a
9	chr14:45725455-45725505	SKMC	muscle:	n/a
10	chr14:45725455-45725505	HCM	heart:	n/a
11	chr14:45725455-45725505	BJ	skin:	n/a
12	chr14:45725455-45725505	H1-hESC	embryonic stem cell:	embryo
13	chr14:45725455-45725505	GM19239	blood:	n/a
14	chr14:45725455-45725505	NB4	blood:	n/a
15	chr14:45725455-45725505	HCF	heart:	n/a
16	chr14:45725455-45725505	GM12891	blood:	n/a
17	chr14:45725455-45725505	HEEpiC	esophagus:	n/a
18	chr14:45725455-45725505	K562	blood:	n/a
19	chr14:45725455-45725505	AG10803	skin:	n/a
20	chr14:45725455-45725505	HepG2	liver:	n/a
21	chr14:45725455-45725505	HPAEpiC	pulmonary alveolar:	n/a
22	chr14:45725455-45725505	U87	brain:	n/a
23	chr14:45725455-45725505	NH-A	brain:	n/a
24	chr14:45725455-45725505	AG04449	skin:	fetal
25	chr14:45725455-45725505	PANC-1	pancreas:	n/a
26	chr14:45725455-45725505	NHBE	bronchial:	n/a
27	chr14:45725455-45725505	Jurkat	blood:	n/a
28	chr14:45725455-45725505	HRPEpiC	eye:	n/a
29	chr14:45725455-45725505	AG09319	gingival:	n/a
30	chr14:45725455-45725505	CMK	blood:	n/a
31	chr14:45725455-45725505	MCF-7	breast:	n/a
32	chr14:45725455-45725505	ovcar-3	ovarian:	n/a
33	chr14:45725455-45725505	HNPCEpiC	eye:	n/a
34	chr14:45725455-45725505	T-47D	breast:	n/a
35	chr14:45725455-45725505	Hela-S3	cervix:	n/a
36	chr14:45725455-45725505	LNCaP	prostate:	n/a
37	chr14:45725455-45725505	HUVEC	blood vessel:	n/a
38	chr14:45725455-45725505	ECC-1	luminal epithelium:	n/a
39	chr14:45725455-45725505	HCPEpiC	choroid plexus:	n/a
40	chr14:45725455-45725505	AG04450	lung:	fetal
41	chr14:45725455-45725505	IMR90	lung:	fetal
42	chr14:45725455-45725505	ProgFib	skin:	n/a
43	chr14:45725455-45725505	SK-N-SH_RA	brain:	n/a
44	chr14:45725455-45725505	SK-N-SH	brain:	n/a
45	chr14:45725455-45725505	SK-N-MC	brain:	n/a
46	chr14:45725455-45725505	NHDF-neo	bronchial:	n/a
47	chr14:45725455-45725505	GM06990	blood:	n/a
48	chr14:45725455-45725505	RPTEC	kidney:	n/a
49	chr14:45725455-45725505	AG09309	skin:	n/a
50	chr14:45725455-45725505	HEK293	kidney:	embryo

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:45721810..45725859-chr14:45742099..45745950,4	MCF-7	breast:
2	chr14:45722872..45725627-chr6:151936857..151939807,2	MCF-7	breast:

No data

Variant related genes	Relation type
MIS18BP1	CpG island
ENSG00000207422	Chromatin interaction
ENSG00000199739	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17115914	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28565418	1.00[EUR][1000 genomes]
rs2899962	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34097926	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34402741	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45607635	1.00[EUR][1000 genomes]
rs59375426	1.00[EUR][1000 genomes]
rs61746895	0.92[EUR][1000 genomes]
rs7141132	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7145397	1.00[EUR][1000 genomes]
rs7149582	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs73350258	1.00[EUR][1000 genomes]
rs8008760	1.00[CEU][hapmap];0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8018014	1.00[CEU][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1803131	chr14:45441932-45726848	Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv901843	chr14:45506857-45833490	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv530814	chr14:45604432-46198418	Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv901844	chr14:45606287-46063731	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
5	nsv1044445	chr14:45606779-45807171	Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	nsv901845	chr14:45619217-45772910	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
7	nsv1045297	chr14:45631260-45755992	Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
8	nsv901846	chr14:45702358-45783546	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
9	nsv564726	chr14:45702358-45911581	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
10	esv2758357	chr14:45706082-45982410	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
11	esv2759987	chr14:45706082-45982410	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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