Variant report

Variant	rs7143445
Chromosome Location	chr14:21200948-21200949
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10131239	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10135243	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1815436	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4144568	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4394987	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6571363	0.88[AFR][1000 genomes]
rs7141656	0.88[AFR][1000 genomes]
rs7141775	0.98[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs7141852	0.98[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs7157189	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7159395	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7159791	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs8003578	0.83[AFR][1000 genomes]
rs8008064	0.83[AFR][1000 genomes]
rs8010867	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8013276	0.86[AFR][1000 genomes]
rs8023192	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043923	chr14:20338742-21336425	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	203 gene(s)	inside rSNPs	diseases
2	nsv541970	chr14:20338742-21336425	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	203 gene(s)	inside rSNPs	diseases
3	esv21015	chr14:20800765-21257878	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
4	nsv1051489	chr14:21026592-21214763	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
5	nsv1045505	chr14:21168839-21337972	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:21189600-21201600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:21192800-21201400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr14:21195400-21209400	Weak transcription	Gastric	stomach
4	chr14:21199000-21203800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr14:21199800-21201600	Weak transcription	Left Ventricle	heart
6	chr14:21200600-21204000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr14:21200800-21201800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
8	chr14:21200800-21201800	Enhancers	Placenta	Placenta
9	chr14:21200800-21202000	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr14:21200800-21202000	Enhancers	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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