Variant report

Variant	rs71442654
Chromosome Location	chr13:76879945-76879946
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10467591	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12429159	0.92[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs12872247	0.92[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs34838047	0.90[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs35004288	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35816480	0.91[AFR][1000 genomes]
rs36074096	0.92[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7324889	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7326514	0.81[EUR][1000 genomes]
rs7327214	0.92[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7328300	0.92[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7330230	0.91[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7994510	0.91[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs9317459	0.84[EUR][1000 genomes]
rs9317461	0.91[AFR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9317477	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9528869	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9592377	0.92[AFR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9592379	0.93[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs9598865	0.91[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs9598867	0.89[AFR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9598868	0.91[AFR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9598869	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9598870	0.91[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs9598871	0.91[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs9598872	0.85[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs9598882	0.93[AFR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054431	chr13:76460431-76885094	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv541837	chr13:76460431-76885094	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1044736	chr13:76728655-77066435	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76878400-76881000	Weak transcription	Fetal Heart	heart
2	chr13:76878400-76881200	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links