Variant report

Variant	rs7144338
Chromosome Location	chr14:105724078-105724079
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:105717901..105719933-chr14:105721820..105724297,3	MCF-7	breast:
2	chr14:105668316..105670026-chr14:105722977..105725479,2	MCF-7	breast:
3	chr14:105718161..105724247-chr14:105765636..105769156,6	MCF-7	breast:
4	chr14:105714177..105717628-chr14:105722002..105724909,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000184887	Chromatin interaction
ENSG00000185024	Chromatin interaction
ENSG00000179364	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1008629	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4270098	1.00[AMR][1000 genomes]
rs45527637	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4572314	1.00[AMR][1000 genomes]
rs56776600	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs67308076	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs67426629	1.00[AMR][1000 genomes]
rs67502922	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs67579680	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7149185	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72711555	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73353763	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8015997	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1828345	chr14:105100787-105803170	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
2	nsv542225	chr14:105133688-105803170	Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
3	nsv542227	chr14:105157572-105803170	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	147 gene(s)	inside rSNPs	diseases
4	nsv917106	chr14:105339195-105803170	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
5	nsv902422	chr14:105420215-105803170	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
6	nsv902423	chr14:105430890-105803170	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
7	nsv902424	chr14:105436222-105803170	Genic enhancers Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	86 gene(s)	inside rSNPs	diseases
8	esv2758369	chr14:105513346-105803170	Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
9	esv2760014	chr14:105513346-105803170	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
10	nsv902441	chr14:105602619-105803170	Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
11	nsv902442	chr14:105602619-105803170	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
12	esv1817919	chr14:105605199-105803170	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
13	nsv530813	chr14:105607701-106453697	Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases
14	nsv902460	chr14:105646179-105731255	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
15	nsv510651	chr14:105656882-105725155	Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
16	nsv566186	chr14:105675701-105779305	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
17	nsv902466	chr14:105704465-105803170	Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
18	esv29986	chr14:105707292-105803170	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
19	nsv832887	chr14:105717339-105803170	Strong transcription Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
20	nsv832888	chr14:105717339-105803170	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
21	nsv1049929	chr14:105718240-105772037	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases
22	nsv1052355	chr14:105718240-105789157	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:105715600-105749400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:105715800-105766000	Weak transcription	Fetal Kidney	kidney
3	chr14:105716000-105732400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr14:105716200-105731200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
5	chr14:105716200-105734000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr14:105716400-105724400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr14:105716400-105730600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr14:105716400-105747800	Weak transcription	Hela-S3	cervix
9	chr14:105716600-105724200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr14:105717000-105725400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr14:105717400-105739600	Strong transcription	Fetal Stomach	stomach
12	chr14:105718000-105724200	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr14:105718400-105730400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr14:105718600-105727200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr14:105718600-105727200	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr14:105718600-105728600	Weak transcription	Fetal Lung	lung
17	chr14:105718600-105739200	Weak transcription	NHEK	skin
18	chr14:105718600-105746600	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr14:105719400-105734600	Weak transcription	Brain Substantia Nigra	brain
20	chr14:105719400-105736600	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr14:105719600-105726400	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr14:105719600-105748200	Weak transcription	Fetal Thymus	thymus
23	chr14:105719800-105725200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr14:105719800-105730200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr14:105719800-105734200	Weak transcription	Brain Angular Gyrus	brain
26	chr14:105719800-105734600	Weak transcription	Ovary	ovary
27	chr14:105720000-105729000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr14:105720400-105730600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr14:105720400-105749400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr14:105720600-105726200	Weak transcription	Brain Germinal Matrix	brain
31	chr14:105720600-105727000	Weak transcription	Liver	Liver
32	chr14:105720600-105728600	Weak transcription	Esophagus	oesophagus
33	chr14:105720600-105748400	Weak transcription	HepG2	liver
34	chr14:105721400-105724400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr14:105721400-105731600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr14:105721600-105725400	Weak transcription	Aorta	Aorta
37	chr14:105721600-105734600	Weak transcription	NHLF	lung
38	chr14:105721800-105725200	Weak transcription	A549	lung
39	chr14:105721800-105729400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr14:105721800-105759800	Weak transcription	Colon Smooth Muscle	Colon
41	chr14:105722000-105726400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr14:105722000-105727600	Weak transcription	Left Ventricle	heart
43	chr14:105722000-105734000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr14:105722000-105740200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr14:105722000-105760600	Weak transcription	NH-A	brain
46	chr14:105722200-105724200	Strong transcription	Adipose Nuclei	Adipose
47	chr14:105722200-105726000	Weak transcription	Fetal Heart	heart
48	chr14:105722200-105726200	Weak transcription	Osteobl	bone
49	chr14:105722200-105727600	Weak transcription	Psoas Muscle	Psoas
50	chr14:105722200-105728800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links