Variant report

Variant	rs71449125
Chromosome Location	chr11:26655453-26655454
allele	AG/CA
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10430934	0.88[AMR][1000 genomes]
rs10767564	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10767565	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs10767566	0.86[AMR][1000 genomes]
rs10835030	0.85[AMR][1000 genomes]
rs10835032	0.88[AMR][1000 genomes]
rs10835033	0.88[AMR][1000 genomes]
rs10835034	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10835035	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10835036	0.82[AFR][1000 genomes]
rs10835037	0.82[AFR][1000 genomes]
rs10835038	0.82[AFR][1000 genomes]
rs10835039	0.83[AFR][1000 genomes]
rs10835040	0.82[AFR][1000 genomes]
rs11029654	0.88[AMR][1000 genomes]
rs11029659	0.82[AFR][1000 genomes]
rs12795885	0.82[AFR][1000 genomes]
rs2029713	0.80[ASN][1000 genomes]
rs2295	0.81[AMR][1000 genomes]
rs35290179	0.82[AFR][1000 genomes]
rs4255495	0.82[AFR][1000 genomes]
rs4268466	0.82[AFR][1000 genomes]
rs4288713	0.82[AFR][1000 genomes]
rs4316465	0.82[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs4320913	0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4396242	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4469843	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4474389	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs4480494	0.82[AFR][1000 genomes]
rs4498947	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4551717	0.82[AFR][1000 genomes]
rs6484224	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs6484225	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs6484226	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6484227	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs6484228	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs6484229	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs6484230	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs6484231	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6484232	0.82[AFR][1000 genomes]
rs7106245	0.82[AFR][1000 genomes]
rs7107528	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7479072	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7929519	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7929611	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7933233	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7933405	0.82[AFR][1000 genomes]
rs7938755	0.80[ASN][1000 genomes]
rs7941987	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7942467	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7942776	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7943086	0.84[AMR][1000 genomes]
rs7946841	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1050121	chr11:26532655-26675303	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv540974	chr11:26532655-26675303	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv916187	chr11:26576875-27328603	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv553907	chr11:26654581-26670850	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26645200-26671600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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