Variant report

Variant	rs71449783
Chromosome Location	chr12:41264073-41264074
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12813013	0.83[EUR][1000 genomes]
rs12815418	0.83[EUR][1000 genomes]
rs12831625	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34031277	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34483042	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34519483	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34552698	0.83[AMR][1000 genomes]
rs34778624	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34797157	0.88[AMR][1000 genomes]
rs34862559	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35148802	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35234650	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35291059	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35319114	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35354319	0.94[AMR][1000 genomes]
rs35489344	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35546944	0.88[AMR][1000 genomes]
rs35582145	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35751491	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36063194	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs58321893	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs66467974	0.83[AMR][1000 genomes]
rs67410126	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs71449780	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs71449781	0.94[AMR][1000 genomes]
rs71449782	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs71449786	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427909	chr12:41054306-41322257	Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832380	chr12:41132306-41323961	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41226800-41266400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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