Variant report
Variant | rs7144989 |
---|---|
Chromosome Location | chr14:35197235-35197236 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr14:35191597..35194615-chr14:35196317..35199532,3 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10130590 | 0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs11845001 | 0.84[EUR][1000 genomes] |
rs12589520 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2383669 | 1.00[ASN][1000 genomes] |
rs2383670 | 1.00[ASN][1000 genomes] |
rs2383671 | 1.00[ASN][1000 genomes] |
rs58803997 | 0.87[ASN][1000 genomes] |
rs6571681 | 0.94[AFR][1000 genomes];0.91[EUR][1000 genomes] |
rs6571682 | 0.90[ASW][hapmap];0.95[CEU][hapmap];0.95[GIH][hapmap];0.95[LWK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.91[EUR][1000 genomes] |
rs66562349 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7144858 | 1.00[ASN][1000 genomes] |
rs8011559 | 1.00[ASN][1000 genomes] |
rs8011617 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs8017731 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1040980 | chr14:34345018-35255592 | Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 109 gene(s) | inside rSNPs | diseases |
2 | nsv1048408 | chr14:34958352-35255592 | Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 63 gene(s) | inside rSNPs | diseases |
3 | esv3392700 | chr14:34989406-35365530 | Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 85 gene(s) | inside rSNPs | diseases |
4 | nsv1041857 | chr14:35084889-35417180 | Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 45 gene(s) | inside rSNPs | diseases |
5 | nsv542030 | chr14:35176687-35211119 | Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionmiRNA target site | 6 gene(s) | inside rSNPs | diseases |
6 | nsv1040350 | chr14:35196524-35245409 | Enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 6 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr14:35184400-35204000 | Weak transcription | Pancreas | Pancrea |
2 | chr14:35192600-35202000 | Weak transcription | HSMMtube | muscle |