Variant report

Variant	rs7145633
Chromosome Location	chr14:24650047-24650048
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:24616879..24619569-chr14:24649212..24652143,2	K562	blood:
2	chr14:24647886..24650156-chr14:24680115..24682418,2	MCF-7	breast:
3	chr1:149223792..149225481-chr14:24649536..24651486,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000254505	Chromatin interaction
ENSG00000092098	Chromatin interaction
ENSG00000206737	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1061838	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11547058	0.85[JPT][hapmap]
rs11622031	0.81[MEX][hapmap]
rs1543518	0.95[JPT][hapmap]
rs1885711	0.89[GIH][hapmap];0.81[MEX][hapmap]
rs3742503	0.92[ASN][1000 genomes]
rs4981495	0.95[JPT][hapmap]
rs4981496	0.95[JPT][hapmap]
rs4982867	0.95[JPT][hapmap]
rs6573607	0.85[GIH][hapmap];0.90[MEX][hapmap];0.94[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3405661	chr14:24189883-24670942	Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	131 gene(s)	inside rSNPs	diseases
2	esv1827678	chr14:24520544-24663325	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	106 gene(s)	inside rSNPs	diseases
3	nsv869985	chr14:24578013-24652669	Genic enhancers Flanking Active TSS Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv901498	chr14:24591892-24662177	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
5	nsv522667	chr14:24641526-24654590	Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	esv1804053	chr14:24642785-24660721	Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7145633	TM9SF1	cis	multi-tissue	Pritchard

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24631600-24653800	Weak transcription	K562	blood
2	chr14:24641400-24656000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr14:24641600-24656600	Strong transcription	Placenta	Placenta
4	chr14:24641600-24656800	Weak transcription	Right Atrium	heart
5	chr14:24641800-24653400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr14:24641800-24656400	Strong transcription	Adipose Nuclei	Adipose
7	chr14:24642000-24656200	Strong transcription	Lung	lung
8	chr14:24642200-24650200	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr14:24642200-24654600	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr14:24642200-24656000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr14:24642200-24656000	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr14:24642400-24656400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr14:24642600-24653200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr14:24642600-24655200	Strong transcription	Spleen	Spleen
15	chr14:24642600-24656200	Strong transcription	Fetal Stomach	stomach
16	chr14:24642800-24654600	Weak transcription	Fetal Kidney	kidney
17	chr14:24643000-24651600	Genic enhancers	Fetal Intestine Large	intestine
18	chr14:24643000-24652000	Genic enhancers	Fetal Intestine Small	intestine
19	chr14:24643000-24656400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr14:24643400-24656400	Strong transcription	Primary T cells from cord blood	blood
21	chr14:24643400-24656400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr14:24643400-24656800	Strong transcription	Brain Germinal Matrix	brain
23	chr14:24643800-24656200	Strong transcription	Primary T helper cells fromperipheralblood	blood
24	chr14:24643800-24656200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr14:24643800-24656200	Strong transcription	Gastric	stomach
26	chr14:24643800-24656600	Strong transcription	HUES64 Cell Line	embryonic stem cell
27	chr14:24643800-24656600	Weak transcription	Fetal Brain Male	brain
28	chr14:24644000-24656200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr14:24644000-24656600	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr14:24644000-24656800	Strong transcription	Thymus	Thymus
31	chr14:24644200-24656200	Strong transcription	Fetal Brain Female	brain
32	chr14:24644200-24656800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr14:24644400-24656400	Strong transcription	Sigmoid Colon	Sigmoid Colon
34	chr14:24644400-24656800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr14:24644600-24652400	Strong transcription	Fetal Thymus	thymus
36	chr14:24644800-24656000	Strong transcription	Primary T cells fromperipheralblood	blood
37	chr14:24644800-24656600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr14:24645000-24656200	Strong transcription	Primary neutrophils fromperipheralblood	blood
39	chr14:24645400-24656400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
40	chr14:24645400-24656600	Strong transcription	Duodenum Smooth Muscle	Duodenum
41	chr14:24645600-24656000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr14:24645600-24656600	Strong transcription	H1 Cell Line	embryonic stem cell
43	chr14:24645600-24656600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr14:24645600-24657000	Strong transcription	HUES48 Cell Line	embryonic stem cell
45	chr14:24645600-24657000	Strong transcription	HUES6 Cell Line	embryonic stem cell
46	chr14:24645800-24653000	Strong transcription	Primary hematopoietic stem cells	blood
47	chr14:24645800-24655800	Strong transcription	Placenta Amnion	Placenta Amnion
48	chr14:24645800-24656200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr14:24645800-24656200	Strong transcription	Primary B cells from peripheral blood	blood
50	chr14:24645800-24656200	Strong transcription	Primary T helper cells PMA-I stimulated	--

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