Variant report

Variant	rs71459279
Chromosome Location	chr12:45342009-45342010
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:45341565..45342209-chr12:45516342..45517228,2	MCF-7	breast:
2	chr12:44152736..44154248-chr12:45340094..45342820,2	K562	blood:
3	chr12:45336563..45338424-chr12:45340632..45342622,2	K562	blood:

Variant related genes	Relation type
ENSG00000198001	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10506260	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11609078	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11609889	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11612170	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11612586	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11613494	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11614600	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11615455	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12810186	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12811419	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12811488	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12813393	0.89[EUR][1000 genomes]
rs12816104	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12816234	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12816596	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12818196	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12822209	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12829582	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12830481	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12831193	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1605295	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17095316	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17598279	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28696281	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34073769	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34089464	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34568257	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34608296	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34685472	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35018588	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35256979	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35374916	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35514455	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35555451	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35781370	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35799097	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35939831	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs71459269	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71459270	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71459276	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs71459290	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71459292	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899049	chr12:45299202-45376053	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv899050	chr12:45299202-45400614	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv899051	chr12:45307633-45376053	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv527565	chr12:45319767-45365812	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45337000-45342400	Weak transcription	HepG2	liver
2	chr12:45340800-45342200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr12:45341200-45342200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr12:45341200-45342400	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr12:45341400-45342200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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