Variant report

Variant	rs71461492
Chromosome Location	chrY:15891307-15891308
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11829660	1.00[AMR][1000 genomes]
rs11833677	1.00[AMR][1000 genomes]
rs55758865	1.00[AMR][1000 genomes]
rs57728782	1.00[AMR][1000 genomes]
rs59020369	1.00[AMR][1000 genomes]
rs59328292	1.00[AMR][1000 genomes]
rs59593939	1.00[AMR][1000 genomes]
rs7138956	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534170	chrY:15744612-16023278	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrY:15881600-15900400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chrY:15888600-15893600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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