Variant report

Variant	rs7146307
Chromosome Location	chr14:68069583-68069584
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68068683..68070494-chr14:68139357..68141644,2	MCF-7	breast:
2	chr14:68033912..68036171-chr14:68066958..68069605,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100568	Chromatin interaction
ENSG00000054690	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10129995	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12588931	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3742872	0.82[TSI][hapmap];0.80[AMR][1000 genomes]
rs3742875	0.91[TSI][hapmap];0.85[AMR][1000 genomes]
rs3809389	0.83[GIH][hapmap];0.93[JPT][hapmap]
rs45474396	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4899212	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61990083	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61990084	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61990086	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61990087	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61990109	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61990110	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61990111	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61990112	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61990113	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61990114	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61990115	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61990116	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61990117	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6573785	0.91[TSI][hapmap];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72721044	0.80[AMR][1000 genomes]
rs749269	0.83[GIH][hapmap];0.93[JPT][hapmap]
rs749270	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs8010574	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8011057	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456331	chr14:67732861-68103780	Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv564961	chr14:67732861-68103780	Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv470651	chr14:67732861-68113293	Active TSS Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	nsv902066	chr14:67873128-68103780	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68067400-68069800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:68067400-68069800	Weak transcription	Ovary	ovary
3	chr14:68067400-68070200	Weak transcription	Pancreas	Pancrea
4	chr14:68067400-68070400	Enhancers	Primary B cells from cord blood	blood
5	chr14:68067400-68070800	Enhancers	Primary B cells from peripheral blood	blood
6	chr14:68067400-68071200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr14:68067400-68076600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr14:68067600-68069600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr14:68067600-68069800	Weak transcription	HepG2	liver
10	chr14:68067800-68069800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr14:68069200-68069800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr14:68069200-68070000	Active TSS	GM12878-XiMat	blood
13	chr14:68069400-68069600	Enhancers	Fetal Kidney	kidney

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links