Variant report

Variant	rs71463241
Chromosome Location	chr12:60227386-60227387
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 177 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:173)

rs_ID	r²[population]
rs10877341	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11173153	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11173157	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11173167	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11173168	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11534930	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12578499	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12579986	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12718000	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12811123	0.94[EUR][1000 genomes]
rs12811364	0.87[EUR][1000 genomes]
rs12812257	0.87[EUR][1000 genomes]
rs12816372	0.87[EUR][1000 genomes]
rs12817723	0.93[EUR][1000 genomes]
rs12819402	0.87[EUR][1000 genomes]
rs12821998	0.87[EUR][1000 genomes]
rs12823549	0.87[EUR][1000 genomes]
rs12823946	0.87[EUR][1000 genomes]
rs12824130	0.87[EUR][1000 genomes]
rs12824156	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12824305	0.90[EUR][1000 genomes]
rs12824312	0.90[EUR][1000 genomes]
rs12824395	0.87[EUR][1000 genomes]
rs12824600	0.87[EUR][1000 genomes]
rs12824910	0.88[EUR][1000 genomes]
rs12826493	0.93[EUR][1000 genomes]
rs12826693	0.93[EUR][1000 genomes]
rs12826770	0.93[EUR][1000 genomes]
rs12826963	0.87[EUR][1000 genomes]
rs12827043	0.83[EUR][1000 genomes]
rs12827221	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12827292	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12827420	0.93[EUR][1000 genomes]
rs12828834	0.85[EUR][1000 genomes]
rs12830142	0.82[EUR][1000 genomes]
rs12831305	0.93[EUR][1000 genomes]
rs1613477	0.87[EUR][1000 genomes]
rs1613544	0.87[EUR][1000 genomes]
rs1617982	0.87[EUR][1000 genomes]
rs1619563	0.87[EUR][1000 genomes]
rs1693597	0.87[EUR][1000 genomes]
rs1693598	0.87[EUR][1000 genomes]
rs1693600	0.87[EUR][1000 genomes]
rs1693601	0.87[EUR][1000 genomes]
rs1693602	0.87[EUR][1000 genomes]
rs1693603	0.87[EUR][1000 genomes]
rs1693604	0.87[EUR][1000 genomes]
rs1693605	0.87[EUR][1000 genomes]
rs1693607	0.87[EUR][1000 genomes]
rs17120243	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17122972	0.93[EUR][1000 genomes]
rs17122978	0.93[EUR][1000 genomes]
rs17122980	0.91[EUR][1000 genomes]
rs17122985	0.93[EUR][1000 genomes]
rs17122992	0.93[EUR][1000 genomes]
rs17649791	0.93[EUR][1000 genomes]
rs1795883	0.87[EUR][1000 genomes]
rs1795889	0.87[EUR][1000 genomes]
rs1795890	0.87[EUR][1000 genomes]
rs1795893	0.87[EUR][1000 genomes]
rs1795895	0.87[EUR][1000 genomes]
rs1795898	0.87[EUR][1000 genomes]
rs1882504	0.93[EUR][1000 genomes]
rs1882505	0.87[EUR][1000 genomes]
rs2178671	0.87[EUR][1000 genomes]
rs2178672	0.87[EUR][1000 genomes]
rs2222878	0.87[EUR][1000 genomes]
rs2222879	0.93[EUR][1000 genomes]
rs2244244	0.87[EUR][1000 genomes]
rs2706280	0.90[EUR][1000 genomes]
rs2706282	0.85[EUR][1000 genomes]
rs2706283	0.85[EUR][1000 genomes]
rs2706284	0.90[EUR][1000 genomes]
rs2706286	0.90[EUR][1000 genomes]
rs2706287	0.90[EUR][1000 genomes]
rs2706289	0.90[EUR][1000 genomes]
rs2706290	0.90[EUR][1000 genomes]
rs2706291	0.90[EUR][1000 genomes]
rs2706292	0.87[EUR][1000 genomes]
rs2706293	0.90[EUR][1000 genomes]
rs2706294	0.93[EUR][1000 genomes]
rs2706300	0.87[EUR][1000 genomes]
rs2706302	0.87[EUR][1000 genomes]
rs2706305	0.87[EUR][1000 genomes]
rs2706307	0.87[EUR][1000 genomes]
rs2706308	0.87[EUR][1000 genomes]
rs2706310	0.85[EUR][1000 genomes]
rs2706311	0.85[EUR][1000 genomes]
rs2706312	0.87[EUR][1000 genomes]
rs2706317	0.87[EUR][1000 genomes]
rs2706318	0.87[EUR][1000 genomes]
rs2706320	0.87[EUR][1000 genomes]
rs2706321	0.85[EUR][1000 genomes]
rs2706322	0.87[EUR][1000 genomes]
rs2711651	0.90[EUR][1000 genomes]
rs2711652	0.90[EUR][1000 genomes]
rs2711654	0.90[EUR][1000 genomes]
rs2711658	0.90[EUR][1000 genomes]
rs2711660	0.90[EUR][1000 genomes]
rs2711662	0.90[EUR][1000 genomes]
rs2711663	0.87[EUR][1000 genomes]
rs2711664	0.87[EUR][1000 genomes]
rs2711667	0.87[EUR][1000 genomes]
rs2711669	0.87[EUR][1000 genomes]
rs2711673	0.85[EUR][1000 genomes]
rs2711674	0.85[EUR][1000 genomes]
rs2711675	0.85[EUR][1000 genomes]
rs2711676	0.85[EUR][1000 genomes]
rs2711678	0.87[EUR][1000 genomes]
rs2711679	0.87[EUR][1000 genomes]
rs2711680	0.87[EUR][1000 genomes]
rs2711683	0.82[EUR][1000 genomes]
rs2711686	0.87[EUR][1000 genomes]
rs2711687	0.90[EUR][1000 genomes]
rs2711688	0.85[EUR][1000 genomes]
rs2711689	0.90[EUR][1000 genomes]
rs2711690	0.90[EUR][1000 genomes]
rs2711692	0.90[EUR][1000 genomes]
rs2711693	0.90[EUR][1000 genomes]
rs2952446	0.90[EUR][1000 genomes]
rs34038000	0.87[EUR][1000 genomes]
rs34040471	0.93[EUR][1000 genomes]
rs34089003	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34149184	0.88[EUR][1000 genomes]
rs34153651	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34183506	0.87[EUR][1000 genomes]
rs34272110	0.87[EUR][1000 genomes]
rs34659184	0.93[EUR][1000 genomes]
rs34790713	0.90[EUR][1000 genomes]
rs34860779	0.93[EUR][1000 genomes]
rs34861412	0.87[EUR][1000 genomes]
rs35096295	0.91[EUR][1000 genomes]
rs35140316	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35203350	0.90[EUR][1000 genomes]
rs35397369	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35399130	0.87[EUR][1000 genomes]
rs35506739	0.87[EUR][1000 genomes]
rs35613243	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35661132	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35755432	0.90[EUR][1000 genomes]
rs35889150	0.90[EUR][1000 genomes]
rs36072512	0.87[EUR][1000 genomes]
rs36077154	0.90[EUR][1000 genomes]
rs36159000	0.90[EUR][1000 genomes]
rs3763979	0.93[EUR][1000 genomes]
rs4131430	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4432061	0.93[EUR][1000 genomes]
rs5012615	0.94[EUR][1000 genomes]
rs61933773	0.87[EUR][1000 genomes]
rs61933775	0.87[EUR][1000 genomes]
rs61933776	0.87[EUR][1000 genomes]
rs61933793	0.83[EUR][1000 genomes]
rs61933804	0.90[EUR][1000 genomes]
rs61933838	0.93[EUR][1000 genomes]
rs61933843	0.93[EUR][1000 genomes]
rs61933848	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61935606	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61935608	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61935610	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62625022	0.87[EUR][1000 genomes]
rs6581273	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7132933	0.87[EUR][1000 genomes]
rs7137002	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7298553	0.87[EUR][1000 genomes]
rs7303705	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7484893	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7956657	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7967144	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7971641	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7971727	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7972637	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7976838	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9325168	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869425	chr12:59746898-60479741	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	esv3365928	chr12:60042531-60343212	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv899134	chr12:60141518-60263723	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv899135	chr12:60156046-60228610	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:60225400-60240000	Weak transcription	H9 Cell Line	embryonic stem cell

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