Variant report

Variant	rs71463397
Chromosome Location	chr12:39312117-39312118
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12812481	1.00[ASN][1000 genomes]
rs12823340	1.00[ASN][1000 genomes]
rs1516556	1.00[ASN][1000 genomes]
rs34434202	1.00[ASN][1000 genomes]
rs34589728	1.00[ASN][1000 genomes]
rs35134389	1.00[ASN][1000 genomes]
rs35293733	1.00[ASN][1000 genomes]
rs35387593	1.00[ASN][1000 genomes]
rs61937605	1.00[ASN][1000 genomes]
rs61937606	1.00[ASN][1000 genomes]
rs61937608	1.00[ASN][1000 genomes]
rs61937609	1.00[ASN][1000 genomes]
rs61937611	1.00[ASN][1000 genomes]
rs61937612	1.00[ASN][1000 genomes]
rs61937614	1.00[ASN][1000 genomes]
rs61937615	1.00[ASN][1000 genomes]
rs61937650	1.00[ASN][1000 genomes]
rs61937657	1.00[ASN][1000 genomes]
rs61937658	1.00[ASN][1000 genomes]
rs61937659	1.00[ASN][1000 genomes]
rs61939160	1.00[ASN][1000 genomes]
rs61939161	1.00[ASN][1000 genomes]
rs61939584	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047623	chr12:39187817-39539939	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	esv3389115	chr12:39221256-39448458	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv899009	chr12:39284077-39441096	Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	esv2761733	chr12:39309714-39413045	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:39310000-39313000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr12:39311800-39312400	Enhancers	HMEC	breast
3	chr12:39311800-39312600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr12:39311800-39313000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr12:39311800-39313200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr12:39311800-39313800	Enhancers	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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